Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1234 102 2e-16 seq211 95.1 3e-14 >seq1234 Length=712154 Score = 102 bits (112), Expect = 2e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076 || |||| || || ||||| |||||||| || || ||||| || || |||||| | | | Sbjct 701811 TCTACGGGCCCCCGGGAACGGGCAAGACCTCCACGATCCTCGCCCTCGCCCGACGCATCT 701870 Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136 |||| | ||||||| | || || |||||||| ||||| || ||||| || || Sbjct 701871 ACGGCGCCGAGAACATGCGCCAGATGGTCCTCGAGCTTAACGCCTCCGACGACCGTGGTA 701930 Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 | |||||||| ||||| ||||||||||||| Sbjct 701931 TCGACGTCGTGCGCGAGCAGATCAAGACTTT 701961 >seq211 Length=153984 Score = 95.1 bits (104), Expect = 3e-14 Identities = 378/586 (65%), Gaps = 18/586 (3%) Strand=Plus/Minus Query 248830 GCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGA 248889 ||||| || || |||||| ||| ||||| ||||| ||||||||||||| | || || Sbjct 109831 GCTTT-AAGACCTTGGAGAGATCCTATCTTCTCAAGCTTGATGGCAAGATTGCCGAGAGA 109773 Query 248890 ATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTG 248949 ||||||||| | ||||| || || || || || || || | ||| |||| Sbjct 109772 CCACAGCACATGATCATGCGCGTTGCCGTTGGCATCTGGGGCGACGATGTTGAGCGCGTC 109713 Query 248950 CTCGAGACGTACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTT 249008 | ||||| |||| | ||| | | | | || | || || || | || || | || Sbjct 109712 ATTGAGACATACAACTTGATGTCGAGCAAG-TGCTTCACCCACGCTTCGCCCACATTGTT 109654 Query 249009 CAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGA 249068 |||||||||||| | | |||||| || |||||||| | | |||| | || || Sbjct 109653 CAACGCCGGTACTCCCCAGGCACAGCTGTCGTCCTGCTTTCTCGTCGACATGAAGGAAGA 109594 Query 249069 CTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGG 249127 |||| | || ||||| || ||||| || || || | || | ||| || ||| | || | Sbjct 109593 CTCTATTGAGGGCATCTACGACACTCTGAAGACCTGC-GCCATGATATCAAAAATGGCCG 109535 Query 249128 GCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAA 249187 |||| || ||||| ||| | |||||| || | || || |||||| || || | Sbjct 109534 GCGGCATTGGTCTAAATGTCCACCGCATCCGTGCCACTGGCTCCTACATCGCCGGCACCA 109475 Query 249188 ATGGGGTCAGTGATGGTATCGTACCCC--TCCTTCGATGCTTTGAGTCCACCGCCAGGTT 249245 |||| | | ||| | |||||| | || || ||| | ||||||| | | Sbjct 109474 ATGGCACCTCCAACGGTGT--TACCCCTATGCTCCGCGTCTTCAACAACACCGCCCGCTA 109417 Query 249246 CATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTG 249299 || |||||| || ||||| || | || ||||| || | || || Sbjct 109416 TGTCGACCAGGGTGGCAACAAGCGCC---CCGGTGCCTTTGCCATCTACCTCGAGCCCTG 109360 Query 249300 GCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAG 249359 ||| ||||| | || ||||| ||||| | |||||| ||||||| ||| | | Sbjct 109359 GCATGCCGACGTCTTCGAGTTTTTGGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCG 109300 Query 249360 AGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 || |||||||| ||| || ||| ||| || | || | |||||| Sbjct 109299 TGCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATG 109254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073744883063552