Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1234 102 2e-16
seq211 95.1 3e-14
>seq1234
Length=712154
Score = 102 bits (112), Expect = 2e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 254017 TCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGT 254076
|| |||| || || ||||| |||||||| || || ||||| || || |||||| | | |
Sbjct 701811 TCTACGGGCCCCCGGGAACGGGCAAGACCTCCACGATCCTCGCCCTCGCCCGACGCATCT 701870
Query 254077 TGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGT 254136
|||| | ||||||| | || || |||||||| ||||| || ||||| || ||
Sbjct 701871 ACGGCGCCGAGAACATGCGCCAGATGGTCCTCGAGCTTAACGCCTCCGACGACCGTGGTA 701930
Query 254137 TGGACGTCGTCCGCGACAAGATCAAGACTTT 254167
| |||||||| ||||| |||||||||||||
Sbjct 701931 TCGACGTCGTGCGCGAGCAGATCAAGACTTT 701961
>seq211
Length=153984
Score = 95.1 bits (104), Expect = 3e-14
Identities = 378/586 (65%), Gaps = 18/586 (3%)
Strand=Plus/Minus
Query 248830 GCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGA 248889
||||| || || |||||| ||| ||||| ||||| ||||||||||||| | || ||
Sbjct 109831 GCTTT-AAGACCTTGGAGAGATCCTATCTTCTCAAGCTTGATGGCAAGATTGCCGAGAGA 109773
Query 248890 ATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTG 248949
||||||||| | ||||| || || || || || || || | ||| ||||
Sbjct 109772 CCACAGCACATGATCATGCGCGTTGCCGTTGGCATCTGGGGCGACGATGTTGAGCGCGTC 109713
Query 248950 CTCGAGACGTACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTT 249008
| ||||| |||| | ||| | | | | || | || || || | || || | ||
Sbjct 109712 ATTGAGACATACAACTTGATGTCGAGCAAG-TGCTTCACCCACGCTTCGCCCACATTGTT 109654
Query 249009 CAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGA 249068
|||||||||||| | | |||||| || |||||||| | | |||| | || ||
Sbjct 109653 CAACGCCGGTACTCCCCAGGCACAGCTGTCGTCCTGCTTTCTCGTCGACATGAAGGAAGA 109594
Query 249069 CTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGG 249127
|||| | || ||||| || ||||| || || || | || | ||| || ||| | || |
Sbjct 109593 CTCTATTGAGGGCATCTACGACACTCTGAAGACCTGC-GCCATGATATCAAAAATGGCCG 109535
Query 249128 GCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAA 249187
|||| || ||||| ||| | |||||| || | || || |||||| || || |
Sbjct 109534 GCGGCATTGGTCTAAATGTCCACCGCATCCGTGCCACTGGCTCCTACATCGCCGGCACCA 109475
Query 249188 ATGGGGTCAGTGATGGTATCGTACCCC--TCCTTCGATGCTTTGAGTCCACCGCCAGGTT 249245
|||| | | ||| | |||||| | || || ||| | ||||||| | |
Sbjct 109474 ATGGCACCTCCAACGGTGT--TACCCCTATGCTCCGCGTCTTCAACAACACCGCCCGCTA 109417
Query 249246 CATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTG 249299
|| |||||| || ||||| || | || ||||| || | || ||
Sbjct 109416 TGTCGACCAGGGTGGCAACAAGCGCC---CCGGTGCCTTTGCCATCTACCTCGAGCCCTG 109360
Query 249300 GCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAG 249359
||| ||||| | || ||||| ||||| | |||||| ||||||| ||| | |
Sbjct 109359 GCATGCCGACGTCTTCGAGTTTTTGGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCG 109300
Query 249360 AGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405
|| |||||||| ||| || ||| ||| || | || | ||||||
Sbjct 109299 TGCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATG 109254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073744883063552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |