Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq643 131 1e-25 seq442 102 6e-17 seq835 96.9 3e-15 seq1544 91.5 1e-13 >seq643 Length=80414 Score = 131 bits (144), Expect = 1e-25 Identities = 157/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || |||||||||||||| |||||||||||| || ||| |||| || || || Sbjct 65257 GTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTG 65316 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| |||| ||||| |||||||| || | |||||||||||| || || Sbjct 65317 CTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 65376 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||| | ||| || ||||| ||||| Sbjct 65377 GGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGT 65436 Query 45313 CAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 || ||||| || ||||| |||||| |||||| Sbjct 65437 GAGGGTCTTGACGAAGATCTGCATGATTGCCT 65468 >seq442 Length=625744 Score = 102 bits (112), Expect = 6e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||||||||||||||||| || ||| |||| || Sbjct 417435 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCG 417494 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| |||||||| || | |||||||| ||| Sbjct 417495 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGG 417554 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | | ||||||||| | ||| || |||||| Sbjct 417555 ATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTG 417614 Query 45308 CCCGTCAGAGTCTTCACAA 45326 || || |||||||| |||| Sbjct 417615 CCAGTGAGAGTCTTGACAA 417633 >seq835 Length=459924 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| || ||| |||| || || || || |||||||| | Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 |||| ||||| |||||||| || | |||||||||||| || || ||| || Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | |||| ||| ||||| | |||||| ||||| |||||||| |||||||| | Sbjct 159392 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 159333 Query 45327 A 45327 | Sbjct 159332 A 159332 >seq1544 Length=892 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | || | ||| || || ||||||||| || ||||| || Sbjct 152 GCCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGC 211 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | |||| ||||| || || || || || ||||||| ||| || || ||||| Sbjct 212 AAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGG 271 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||| ||| || || |||||| | | | |||| | ||| || Sbjct 272 AATACCCTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGAC 331 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | |||||| || || || || ||||||||||||||||| ||||| Sbjct 332 CTCGAGGGTAATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || ||| |||| || || |||||||||||||| Sbjct 645 TCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCGAGCTGTTTTCCGGCGAAG 704 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || || ||||| || || | || ||||||||| || || ||| || Sbjct 705 ATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTG 764 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| || ||| ||||| | || || ||||| || ||||| || || || Sbjct 765 TCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCGGTCAGGGTTTTAACG 824 Query 45326 AAGATTTGCATGTTG 45340 || |||||||| ||| Sbjct 825 AATATTTGCATCTTG 839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395067669372844