Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1201 134 3e-26 seq211 95.1 2e-14 >seq1201 Length=295393 Score = 134 bits (148), Expect = 3e-26 Identities = 296/446 (66%), Gaps = 21/446 (5%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || || || || |||||||| || ||||| ||||| ||||| |||||| Sbjct 156644 GTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGG 156585 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||| ||||| |||| |||||| ||| |||| || | || Sbjct 156584 CTCAAGAAGCGTGGTCTCATGCCCGGTCTAACCTTCTCCAACGAGCTCATCTCCCGTGAT 156525 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGT---------TGAAAAAGGGTTTTGTT 102088 || ||||| || ||||||||| ||| | |||| |||| | | Sbjct 156524 GAGGGTCTCCACACCGACTTTGCCTGCCTTCTGTACTCTCACCTGAAGCACCG------- 156472 Query 102089 GATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAA 102148 ||||| |||| | |||| || ||| || || || ||| || || ||| Sbjct 156471 ----CCCCAGCAAG-CAGGTGATTGAGGATATTATCGTCGATGCTGTCAAGATCGAGCAA 156417 Query 102149 GAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGC 102208 || || || || | | |||||| | |||| ||||||| ||| |||||| Sbjct 156416 GAGTTCCTGACCGAGGCTCTGCCTTGCGCCCTCCTGGGCATGAACTCCAACCTGATGAAG 156357 Query 102209 CAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTAT 102268 || ||||| || || || || ||| || ||||| | | || || ||| ||| Sbjct 156356 CAATACATCGAGTTCGTCGCTGATCGTCTGTTGGTCGCTCTCGGCAACGACAAGGTCTAC 156297 Query 102269 AATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTT 102328 || ||||||||||| |||||||| || || || || | ||||||||||| Sbjct 156296 AAATCGGCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTGGCAAGACCAACTTC 156237 Query 102329 TTTGAAAAGAGAGTCGCCGAGTATCA 102354 ||||| ||| | |||||||| || || Sbjct 156236 TTTGAGAAGCGTGTCGCCGACTACCA 156211 >seq211 Length=153984 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/175 (72%), Gaps = 14/175 (8%) Strand=Plus/Plus Query 94387 TCTTT--ACCTTTGCCTTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCAT 94444 ||||| ||| |||||||| ||| || ||||||||||| || | || || ||||||| Sbjct 109124 TCTTTCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCTTCGAATTCCTCGCCAT 109183 Query 94445 GGACGTCGGAAAGGCCAGGGCACTCGTGGGGGCACATCAGGGACCA------ATTCTTCC 94498 | ||||| ||| || |||||||||| ||| |||||||| | ||| ||||| Sbjct 109184 AGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTT-- 109241 Query 94499 CAGCCTTCACTCTCTCCATGAAGAGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 || ||||| || |||||||||||||| | ||| | || ||||||| || Sbjct 109242 ----CTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGGTC 109292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989564169973620