Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq442 120 3e-22
seq632 104 2e-17
seq428 104 2e-17
seq1544 87.8 2e-12
>seq442
Length=625744
Score = 120 bits (132), Expect = 3e-22
Identities = 167/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || || | || | || ||||| | || ||||| || |||||||| || |||
Sbjct 417186 TGGCCTCCACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCG 417245
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
| |||| ||| || ||||| ||||||||| |||| ||||| ||||| |||||
Sbjct 417246 GAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGG 417305
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| ||||| || ||||| ||| || || | | || | |||||| | | ||||
Sbjct 417306 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCC 417365
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768
||||| | ||| | |||||||||||||| || || ||||| || |||||| ||
Sbjct 417366 ACCTCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATACCT 417419
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | ||| ||||||| ||||| || || || ||||| |||||
Sbjct 417701 GCCACCGCGGAGACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGA 417760
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| || || ||||| || || || | || ||||||||||| ||||| ||
Sbjct 417761 CAAGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGG 417820
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
||||| || || || ||| || || | | || | || |||| | ||||||
Sbjct 417821 GATGCCCTCCTTATCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCAC 417880
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | |||||||| || | || || ||||| || |||||
Sbjct 417881 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 417928
>seq632
Length=500
Score = 104 bits (114), Expect = 2e-17
Identities = 148/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621
|||| |||||||| || || ||||| || ||| || ||| || ||||| | ||||
Sbjct 225 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCTTCCAACTGT 166
Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681
||||||||| |||||| | || || || || || || ||||||||||| ||| | ||
Sbjct 165 TTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTC-CTGAATCTT 107
Query 139682 TGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
| |||| | | ||| | || || ||||||| ||||||| || | || ||||| ||
Sbjct 106 GGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTTGCCCGT 47
Query 139741 CAACGTTTTTACGAATATTTGCATAG 139766
| || || ||||| || |||||||
Sbjct 46 GAGGGTCTTGACGAAGATCTGCATAG 21
>seq428
Length=571
Score = 104 bits (114), Expect = 2e-17
Identities = 149/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTG 139620
|||| ||||| || || || || || |||||| || |||| || | ||||| |||||
Sbjct 363 TGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCA-TCTTCAAGCTG 421
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
|||||||| | |||| ||| |||||||| ||||| || ||||||||||| ||| | |
Sbjct 422 CTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTC-TTGAATCT 480
Query 139681 TTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739
| || || | | || | |||||| || ||| ||||| | ||| | || || ||||
Sbjct 481 TGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGG 540
Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764
| | ||||| ||||| || |||||
Sbjct 541 TTAGGGTTTTCACGAAAATCTGCAT 565
>seq1544
Length=892
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
||| ||||||||||| || || |||||||||||||||| || || || || ||||| ||
Sbjct 680 GTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTT 739
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
||| ||| || || | | || | ||||| | ||| ||||| | || |
Sbjct 740 GTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGAT 799
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| ||||||| ||||| ||||||||||||||
Sbjct 800 GGTCTTTCCGGTCAGGGTTTTAACGAATATTTGCAT 835
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496054301948800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |