Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq211 172 8e-38
seq1201 122 1e-22
>seq211
Length=153984
Score = 172 bits (190), Expect = 8e-38
Identities = 618/951 (65%), Gaps = 28/951 (3%)
Strand=Plus/Plus
Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680
|| |||| || || ||||| ||||| | || ||| || | || ||||| |||||
Sbjct 108928 GACGCCAAGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGCAA 108987
Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCATC 79739
||||| | |||||| || | ||| | || || ||||| ||| || | |||
Sbjct 108988 AGGTTGGAGCTTCGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG-ATC 109046
Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799
||| || || ||||| || | || || ||| |||| | || | ||| || | |||||
Sbjct 109047 CTTGTAGAGCATGAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCAGA- 109105
Query 79800 GACTC-GAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTTTCGTATTGTGTATATA 79855
| || | ||||| || | ||| | ||| ||| | ||||| | || |
Sbjct 109106 GCTTCTGGGCCTTCATGGT---CTTTCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACA 109162
Query 79856 ATCGTTCGAACTCGTCTCCCCAAA-CA-TCGTCTAATCCAGGACATTCGTCAGGACACAT 79913
| |||||| || ||| ||| | || ||| | | || || || |||| ||||||||
Sbjct 109163 AGGCTTCGAATTC--CTCGCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACAT 109220
Query 79914 CAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973
|| | ||| || || | | || ||||| ||||| ||||||||||| |||||||| ||
Sbjct 109221 CAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGC 109280
Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033
| || || || | || | |||||| || || ||||| || || | ||
Sbjct 109281 GAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAAA 109340
Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093
| | | | || | |||||| || || | ||| ||||| | | || || || |||||
Sbjct 109341 CTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTT 109400
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|| ||||| || | || | |||||||| || | || | | ||| || ||| |||
Sbjct 109401 GCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACACC 109460
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATT 80211
||||| || |||||||| |||| ||| ||| ||| ||||||| || | |||
Sbjct 109461 GTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACATT 109520
Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 80271
|||||| || || || |||||||| || || | ||||| || | || || |||
Sbjct 109521 --TAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAG 109578
Query 80272 ATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC-G 80330
|||||||| || || || |||||| | ||||| ||| |||| | ||| | |
Sbjct 109579 ATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCT-GTGCCTG 109637
Query 80331 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 80390
||| || || || || || || || |||||||| || || || || |||| |
Sbjct 109638 GGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCACTTGCTCGACATCAA 109697
Query 80391 ATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATGAATTCCTACCGCGACAC 80446
||||| |||||||| | || | ||| || |||| || || || || |
Sbjct 109698 GTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCCCAGATG----CCAACGGCAACGC 109753
Query 80447 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATT 80506
|||| | ||||||||| ||||| || | |||||| || | || | | || |||
Sbjct 109754 GCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGAAGATAGGATC 109813
Query 80507 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 80557
| ||||| || ||||| || || || | ||| ||||| || |||||||
Sbjct 109814 TCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAAA 109864
>seq1201
Length=295393
Score = 122 bits (134), Expect = 1e-22
Identities = 365/558 (65%), Gaps = 8/558 (1%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || || ||| ||| |||||||| || | || || |||||||| || || ||
Sbjct 156499 CAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGA 156558
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|||||||| || |||||||| || ||||| || ||||| || || | || ||||||
Sbjct 156559 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAG 156618
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCTGT---CATG 50135
|| || || || |||||||||||||| || | || | | ||| | ||| | ||
Sbjct 156619 ATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGTGGACTTTGTGTCCGTG 156678
Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195
||||| ||||| || |||||||| | || || || || || ||||| ||
Sbjct 156679 -ATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTT 156737
Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255
||||||||| | | | || |||| || || ||||| | ||| || |
Sbjct 156738 GAAGAGATAGGTACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGT 156797
Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315
|| || |||||||| || || ||||| || |||||||| || | ||||||| |
Sbjct 156798 CTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGAC 156857
Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375
||| ||||| | | || || ||| | | || ||||| || || ||||| || ||
Sbjct 156858 CTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGGC 156917
Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT--TGGGTGTTAGT-TTATTCCA 50432
|| || || | | || || || | || || | | | || | | || |||||
Sbjct 156918 GAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCA 156977
Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492
|| | || ||| || || | ||| | || || | ||||| || || ||||| |||||
Sbjct 156978 GTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCAGAAAGAGGCCTCGGCCTT 157037
Query 50493 TTTATACATATTCCAGAT 50510
|| ||||| | ||| ||
Sbjct 157038 CTTGTACATTTGCCAAAT 157055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718254757844960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |