Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq211 172 8e-38 seq1201 122 1e-22 >seq211 Length=153984 Score = 172 bits (190), Expect = 8e-38 Identities = 618/951 (65%), Gaps = 28/951 (3%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || |||| || || ||||| ||||| | || ||| || | || ||||| ||||| Sbjct 108928 GACGCCAAGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGCAA 108987 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA-CACGCATC 79739 ||||| | |||||| || | ||| | || || ||||| ||| || | ||| Sbjct 108988 AGGTTGGAGCTTCGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG-ATC 109046 Query 79740 CTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 79799 ||| || || ||||| || | || || ||| |||| | || | ||| || | ||||| Sbjct 109047 CTTGTAGAGCATGAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCAGA- 109105 Query 79800 GACTC-GAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTTTCGTATTGTGTATATA 79855 | || | ||||| || | ||| | ||| ||| | ||||| | || | Sbjct 109106 GCTTCTGGGCCTTCATGGT---CTTTCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACA 109162 Query 79856 ATCGTTCGAACTCGTCTCCCCAAA-CA-TCGTCTAATCCAGGACATTCGTCAGGACACAT 79913 | |||||| || ||| ||| | || ||| | | || || || |||| |||||||| Sbjct 109163 AGGCTTCGAATTC--CTCGCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACAT 109220 Query 79914 CAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 || | ||| || || | | || ||||| ||||| ||||||||||| |||||||| || Sbjct 109221 CAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGC 109280 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 | || || || | || | |||||| || || ||||| || || | || Sbjct 109281 GAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAAA 109340 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | | | || | |||||| || || | ||| ||||| | | || || || ||||| Sbjct 109341 CTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTT 109400 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 || ||||| || | || | |||||||| || | || | | ||| || ||| ||| Sbjct 109401 GCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACACC 109460 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATT 80211 ||||| || |||||||| |||| ||| ||| ||| ||||||| || | ||| Sbjct 109461 GTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACATT 109520 Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 80271 |||||| || || || |||||||| || || | ||||| || | || || ||| Sbjct 109521 --TAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAG 109578 Query 80272 ATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC-G 80330 |||||||| || || || |||||| | ||||| ||| |||| | ||| | | Sbjct 109579 ATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCT-GTGCCTG 109637 Query 80331 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 80390 ||| || || || || || || || |||||||| || || || || |||| | Sbjct 109638 GGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCACTTGCTCGACATCAA 109697 Query 80391 ATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATGAATTCCTACCGCGACAC 80446 ||||| |||||||| | || | ||| || |||| || || || || | Sbjct 109698 GTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCCCAGATG----CCAACGGCAACGC 109753 Query 80447 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATT 80506 |||| | ||||||||| ||||| || | |||||| || | || | | || ||| Sbjct 109754 GCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGAAGATAGGATC 109813 Query 80507 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 80557 | ||||| || ||||| || || || | ||| ||||| || ||||||| Sbjct 109814 TCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAAA 109864 >seq1201 Length=295393 Score = 122 bits (134), Expect = 1e-22 Identities = 365/558 (65%), Gaps = 8/558 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| |||||||| || | || || |||||||| || || || Sbjct 156499 CAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGA 156558 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || |||||||| || ||||| || ||||| || || | || |||||| Sbjct 156559 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAG 156618 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCTGT---CATG 50135 || || || || |||||||||||||| || | || | | ||| | ||| | || Sbjct 156619 ATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGTGGACTTTGTGTCCGTG 156678 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| ||||| || |||||||| | || || || || || ||||| || Sbjct 156679 -ATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTT 156737 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||||||| | | | || |||| || || ||||| | ||| || | Sbjct 156738 GAAGAGATAGGTACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGT 156797 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || |||||||| || || ||||| || |||||||| || | ||||||| | Sbjct 156798 CTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGAC 156857 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 ||| ||||| | | || || ||| | | || ||||| || || ||||| || || Sbjct 156858 CTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGGC 156917 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGT--TGGGTGTTAGT-TTATTCCA 50432 || || || | | || || || | || || | | | || | | || ||||| Sbjct 156918 GAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCA 156977 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 || | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 156978 GTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCAGAAAGAGGCCTCGGCCTT 157037 Query 50493 TTTATACATATTCCAGAT 50510 || ||||| | ||| || Sbjct 157038 CTTGTACATTTGCCAAAT 157055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718254757844960