Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq428 109 4e-19 >seq428 Length=571 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || | || | ||| | ||| ||||| || | ||||||||||| | Sbjct 339 CCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCC 398 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | || || | || || || || |||||||| ||||| ||||| | || Sbjct 399 AAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGG 458 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| ||||| || | | ||||||| |||||| Sbjct 459 ATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACC 518 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || ||||| |||||||| |||||||| ||||| |||||||| Sbjct 519 TCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381362330618712