Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq211 176 6e-39
>seq211
Length=153984
Score = 176 bits (194), Expect = 6e-39
Identities = 567/872 (65%), Gaps = 16/872 (2%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
|| || || || || |||||||||| || ||| || || | | | ||||| |||||
Sbjct 109198 CCCGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATG 109257
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
||||||||||| |||||||| || | || || || | || | |||||| || ||
Sbjct 109258 AAGAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCG 109317
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
||||| || || | ||| | | | || | |||||| || || | ||| |||
Sbjct 109318 TGGTTCTTGCGGAGGTCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATG 109377
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | || || || ||||| || ||||| || | || | |||||||| || |
Sbjct 109378 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAG 109437
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | | ||| || ||| ||| ||||| | |||||||| |||| ||| ||| |||
Sbjct 109438 ACGCGGAGCATAGGGGTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCA 109497
Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331
||||||| || || ||| |||||| || || || |||||||| || || | |
Sbjct 109498 GTGGCACGGATGCGGTGGACATT--TAGACCAATGCCGCCGGCCATTTTTGATATCATGG 109555
Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391
|||| || | || || ||||||||||| ||| || ||| |||||| | ||||
Sbjct 109556 CGCAGGTCTTCAGAGTGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAA 109615
Query 72392 AACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450
| ||| |||| | ||| | | ||| || || || || || || || ||||||||
Sbjct 109616 AGCAGGACGACAGCT-GTGCCTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGG 109674
Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCA 72506
|| || || || |||| | ||||| |||||||| | || | ||| ||
Sbjct 109675 GTGAAGCACTTGCTCGACATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCC 109734
Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566
|||| || || || || ||||| | ||| ||||| ||||| || | ||||||
Sbjct 109735 CAGATG----CCAACGGCAACGCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCC 109790
Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626
|| | || | | |||||| | ||||| || ||||| || || || | ||| ||
Sbjct 109791 ATCAAGCTTGAGAAGATAGGATCTCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTTGAA 109850
Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCAT 72686
||| || ||||||| || | |||| || | ||||| | | | || |||
Sbjct 109851 GTCGCGGTCGTAAACGATGGCAGAATCAAGCTCCTCCTTGTGCCTCATGACACAATCGTA 109910
Query 72687 GGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATA 72745
|| | ||| | ||| ||||| || ||||| || || || ||||||| | | |
Sbjct 109911 CGT-CTCCTTCGCAATCATCGGGGACAAGCGGCCATTCTTGGGGTTCACATAGTGGTAGA 109969
Query 72746 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTA 72805
||| | ||| | || | || || || | |||||| || || || || || |
Sbjct 109970 GATCGCTGACGACTGAAGACCATTGCTTCTTCGTCTGCTTGTGGAGGTTGGAGACTGCAA 110029
Query 72806 TTCTGGCGGCTAGAATGGCATAATCTGGATGT 72837
| | ||| || || |||||||| || ||||||
Sbjct 110030 TACGGGCAGCAAGGATGGCATAGTCGGGATGT 110061
Score = 96.9 bits (106), Expect = 5e-15
Identities = 349/543 (64%), Gaps = 5/543 (1%)
Strand=Plus/Plus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | |||||||||||||| | | || |||| ||| || || |||||||||
Sbjct 108004 TCCTGGTCGACGGTAAACTGAATGGGGGCAGCAGCAGCTTGCGTGCGCAGGTAGTACATG 108063
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908
|| || || || || || |||| || |||||||| || || | ||| | |
Sbjct 108064 CCGGTCTTCAGCCCTAGCTTCCAGCCTGCGAAATGCATGCTAGTGATCTTGCCCATGGTC 108123
Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968
|| || |||||||| || | ||||| || ||||| ||||| || | ||| ||
Sbjct 108124 GGGTCTTTCATGTGAATGTTGAGGGACTGGGACTGGTCGATAAAGGCGCCACGGTCGGCG 108183
Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028
||||| | | || || ||| | ||||||||| | ||||| || | ||| |
Sbjct 108184 GCCATCTGAACGACGGTACGTTGGGAAATTTCCCAGACGGTTTTGTACAGGGCCTTGACC 108243
Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085
|| | |||| ||| | | ||||| | ||| ||| || |||||||| | || ||
Sbjct 108244 TCGGCGGGAATGTTGGGAATGTTCTGCACGGAGCCATTCTCAGCAATAATGCGGTTCTTC 108303
Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145
|| | ||| ||| || | ||| | | | ||||| ||| || || ||
Sbjct 108304 ATGGCATCAGACCACAAGCCCATGTCGACGAGGTCCTTGAGGAGCCAAGGGTTGACAACC 108363
Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205
||||| || |||| ||| || | ||| ||| || || ||| || || || | |
Sbjct 108364 TGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCAT 108423
Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265
|| || || |||| ||| || | ||| || || ||||| || || || | | ||
Sbjct 108424 TCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACGAGCAAGCTG 108483
Query 71266 TTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA 71324
|| | | |||||| || | ||| | || || ||||| ||||| | ||| || || ||
Sbjct 108484 TTACGCACACCATGCTGCT-TGATCTGTTCCTTGAGAGAATCCCAGTCCCAGAGGTCGGA 108542
Query 71325 TGG 71327
||
Sbjct 108543 GGG 108545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671126079228640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |