Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq211 176 6e-39 >seq211 Length=153984 Score = 176 bits (194), Expect = 6e-39 Identities = 567/872 (65%), Gaps = 16/872 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || |||||||||| || ||| || || | | | ||||| ||||| Sbjct 109198 CCCGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATG 109257 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 ||||||||||| |||||||| || | || || || | || | |||||| || || Sbjct 109258 AAGAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCG 109317 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || || | ||| | | | || | |||||| || || | ||| ||| Sbjct 109318 TGGTTCTTGCGGAGGTCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATG 109377 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | || | |||||||| || | Sbjct 109378 GCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAG 109437 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | | ||| || ||| ||| ||||| | |||||||| |||| ||| ||| ||| Sbjct 109438 ACGCGGAGCATAGGGGTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCA 109497 Query 72274 CTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||||||| || || ||| |||||| || || || |||||||| || || | | Sbjct 109498 GTGGCACGGATGCGGTGGACATT--TAGACCAATGCCGCCGGCCATTTTTGATATCATGG 109555 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 |||| || | || || ||||||||||| ||| || ||| |||||| | |||| Sbjct 109556 CGCAGGTCTTCAGAGTGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAA 109615 Query 72392 AACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 | ||| |||| | ||| | | ||| || || || || || || || |||||||| Sbjct 109616 AGCAGGACGACAGCT-GTGCCTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGG 109674 Query 72451 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCA 72506 || || || || |||| | ||||| |||||||| | || | ||| || Sbjct 109675 GTGAAGCACTTGCTCGACATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCC 109734 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 |||| || || || || ||||| | ||| ||||| ||||| || | |||||| Sbjct 109735 CAGATG----CCAACGGCAACGCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCC 109790 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 || | || | | |||||| | ||||| || ||||| || || || | ||| || Sbjct 109791 ATCAAGCTTGAGAAGATAGGATCTCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTTGAA 109850 Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCAT 72686 ||| || ||||||| || | |||| || | ||||| | | | || ||| Sbjct 109851 GTCGCGGTCGTAAACGATGGCAGAATCAAGCTCCTCCTTGTGCCTCATGACACAATCGTA 109910 Query 72687 GGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATA 72745 || | ||| | ||| ||||| || ||||| || || || ||||||| | | | Sbjct 109911 CGT-CTCCTTCGCAATCATCGGGGACAAGCGGCCATTCTTGGGGTTCACATAGTGGTAGA 109969 Query 72746 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTA 72805 ||| | ||| | || | || || || | |||||| || || || || || | Sbjct 109970 GATCGCTGACGACTGAAGACCATTGCTTCTTCGTCTGCTTGTGGAGGTTGGAGACTGCAA 110029 Query 72806 TTCTGGCGGCTAGAATGGCATAATCTGGATGT 72837 | | ||| || || |||||||| || |||||| Sbjct 110030 TACGGGCAGCAAGGATGGCATAGTCGGGATGT 110061 Score = 96.9 bits (106), Expect = 5e-15 Identities = 349/543 (64%), Gaps = 5/543 (1%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | |||||||||||||| | | || |||| ||| || || ||||||||| Sbjct 108004 TCCTGGTCGACGGTAAACTGAATGGGGGCAGCAGCAGCTTGCGTGCGCAGGTAGTACATG 108063 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || || || || |||| || |||||||| || || | ||| | | Sbjct 108064 CCGGTCTTCAGCCCTAGCTTCCAGCCTGCGAAATGCATGCTAGTGATCTTGCCCATGGTC 108123 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || |||||||| || | ||||| || ||||| ||||| || | ||| || Sbjct 108124 GGGTCTTTCATGTGAATGTTGAGGGACTGGGACTGGTCGATAAAGGCGCCACGGTCGGCG 108183 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||| | | || || ||| | ||||||||| | ||||| || | ||| | Sbjct 108184 GCCATCTGAACGACGGTACGTTGGGAAATTTCCCAGACGGTTTTGTACAGGGCCTTGACC 108243 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 || | |||| ||| | | ||||| | ||| ||| || |||||||| | || || Sbjct 108244 TCGGCGGGAATGTTGGGAATGTTCTGCACGGAGCCATTCTCAGCAATAATGCGGTTCTTC 108303 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || | ||| ||| || | ||| | | | ||||| ||| || || || Sbjct 108304 ATGGCATCAGACCACAAGCCCATGTCGACGAGGTCCTTGAGGAGCCAAGGGTTGACAACC 108363 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 ||||| || |||| ||| || | ||| ||| || || ||| || || || | | Sbjct 108364 TGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCAT 108423 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 || || || |||| ||| || | ||| || || ||||| || || || | | || Sbjct 108424 TCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACGAGCAAGCTG 108483 Query 71266 TTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGA 71324 || | | |||||| || | ||| | || || ||||| ||||| | ||| || || || Sbjct 108484 TTACGCACACCATGCTGCT-TGATCTGTTCCTTGAGAGAATCCCAGTCCCAGAGGTCGGA 108542 Query 71325 TGG 71327 || Sbjct 108543 GGG 108545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671126079228640