Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq632 93.3 4e-14
seq428 89.7 5e-13
seq442 84.2 2e-11
>seq632
Length=500
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| || || | ||| | || | ||||| ||||| || || || |||||||| ||| |
Sbjct 249 CCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 190
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| || ||||| | |||||||||||| |||||| | || || || || ||
Sbjct 189 AATGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGA 130
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||||||||| ||| || ||| | | ||| | || || |||| || ||
Sbjct 129 ATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACC 70
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAG 143186
|||| ||| | || ||||| || | || || ||||| || |||||||
Sbjct 69 TCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATAG 21
>seq428
Length=571
Score = 89.7 bits (98), Expect = 5e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTT 143033
||| | ||||| |||||||| || || || ||||||||| || |||| || | ||||
Sbjct 356 AACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCA-TCTT 414
Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093
| || || |||||||| | |||| ||| |||||||| ||||| || |||||||||||
Sbjct 415 CAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTT 474
Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153
||| || || | | || | ||||| || || || || | || | || |
Sbjct 475 GAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTT 534
Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| ||||| | ||||| ||||| || |||||
Sbjct 535 TCCCGGTTAGGGTTTTCACGAAAATCTGCAT 565
>seq442
Length=625744
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014
|||||||| || | || | || || || | || || || || || |||||||| |||
Sbjct 417186 TGGCCTCCACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCG 417245
Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074
| |||| ||| || || || ||||||||| |||| ||||| ||||| |||||
Sbjct 417246 GAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGG 417305
Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134
|| ||||| || ||||| || || || | | || | ||||| | | ||
Sbjct 417306 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCC 417365
Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188
|| || | || | |||||||||||||| || || ||||| || |||||| ||
Sbjct 417366 ACCTCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCATACCT 417419
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507004487868480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |