Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1201 257 2e-63
seq211 129 9e-25
>seq1201
Length=295393
Score = 257 bits (284), Expect = 2e-63
Identities = 578/850 (68%), Gaps = 35/850 (4%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|||||| |||||||||| ||||| ||||||| || ||||| | || ||| | ||| ||
Sbjct 157055 ATTTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCTGAGGAGATTGATTTG 156996
Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137
|||||||| || |||| ||| | | | | | || || |||| | || || ||
Sbjct 156995 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GATGATGAGAAGTACTTCATCTC 156937
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACAC 125196
|||||| | |||||||| |||| ||||| || |||||||| || || ||| |||| |
Sbjct 156936 TCACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACCTGGTTGAG-C 156878
Query 125197 GATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254
| |||||| || | ||| | || |||| | ||||| ||||| ||||| |||||
Sbjct 156877 GTTTCTCTGGCGAAGT--CCAGGTCCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCAT 156820
Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314
||| |||||| | ||||| || | ||||| || || |||| |||||| || ||
Sbjct 156819 GATGGAGAACATTCACTCCGAGACTTACTCCCTTCTCATCGACACCTACATTAAGGAGCC 156760
Query 125315 G---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371
|| |||| | || ||||| ||||| |||||||| | || | || ||||| ||
Sbjct 156759 TGCCCAGCGTA--CCTAT-CTCTTCAACGCCATCGACACCATCCCCTGCATCCGTAAGAA 156703
Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431
|||| | |||| | || |||||| ||| ||||| | | |||| | | || ||
Sbjct 156702 GGCTGACTGGGCCTTGCGCTGGATCACGGACACAAAGTCCACCTTCGCCCAGCGCCTCGT 156643
Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491
|| || |||||||| |||||||||||||| ||| ||| || ||||||| |||||
Sbjct 156642 TGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCT 156583
Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551
||||||||| || ||||||||||| || || | |||||| | || || || || ||
Sbjct 156582 CAAGAAGCGTGGTCTCATGCCCGGTCTAACCTTCTCCAACGAGCTCATCTCCCGTGATGA 156523
Query 125552 GGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCGCAACT--ATCTGCGTCCCGAGTG 125608
||| || ||| ||||||||| || |||| || || || | | || ||| |
Sbjct 156522 GGGTCTCCACACCGACTTTGCCTGCCTTCTGTACTCTCACCTGAAGCACCGCCCC---AG 156466
Query 125609 CAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668
|| | | | ||| ||| | ||| | |||||| || | ||| || |||||
Sbjct 156465 CA-AGCAGGTGAT--TGAGG------ATATTATCGTCGATGCTGTCAAGATCGAGCAAGA 156415
Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728
||| || ||||| | || || | | | | |||||||||| ||| || ||| |
Sbjct 156414 GTTCCTGACCGAGGCTCTGCCTTGCGCCCTCCTGGGCATGAACTCCAACCTGATGAAGCA 156355
Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTA 125785
||||| ||||| || || |||||||| || || | ||| || |||| | ||
Sbjct 156354 ATACATCGAGTTCGTCGCTGATCGTCTGTTGGTCG---CTCTCGGCAACGACAAGGTCTA 156298
Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845
||| | || ||||| || |||||| | ||| || || | || |||||||||||
Sbjct 156297 CAAATCGGCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTGGCAAGACCAACTT 156238
Query 125846 TTTCGAGAAG 125855
|| ||||||
Sbjct 156237 CTTTGAGAAG 156228
>seq211
Length=153984
Score = 129 bits (142), Expect = 9e-25
Identities = 310/464 (67%), Gaps = 10/464 (2%)
Strand=Plus/Minus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || || | ||| ||||| | || || ||||| || |||
Sbjct 109409 CAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCATGCCGAC 109350
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| || || ||| | || | ||||| ||| ||| || |||| || ||| | |||
Sbjct 109349 GTCTTCGAGTTTTTGGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGAC 109290
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052
| || || || ||| | || ||| | ||||||||||| || || ||||||
Sbjct 109289 CTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGCGAGTGGAGAAGAACGGTG-- 109232
Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112
|||||| || ||||| ||| || || || ||||| |||| |||| ||||| ||
Sbjct 109231 -ACTGGACACTGATGTGTCCCAACGAGTGCCCGGGTCTTGCCGACTGCTATGGCGAGGAA 109173
Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171
|| || ||| |||| | ||||||| || ||| | || |||| | || |
Sbjct 109172 TTCGAAGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGAAAGACCA--TGAAGG 109115
Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230
| |||| || ||| | ||||| | ||| ||| ||||| || | || | ||| |
Sbjct 109114 CCCAGAAGCTCTGGTATGCCATTCTCGAGGCCCAGACTGAGACCGGCAACCCTTTCATGC 109055
Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290
||||||||||| | || ||||| |||||||| | | |||||||| |||
Sbjct 109054 TCTACAAGGATCATGCCAACCGCAAGAGCAACCAGAAGAATCTCGGCACCATTCGAAGCT 108995
Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334
|||| || ||||||||||| | |||||| | | || ||||||
Sbjct 108994 CCAACCTTTGCACGGAAATCATTGAGTACTCGGCCCCTGACGAG 108951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741044712292640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |