Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1201 257 2e-63 seq211 129 9e-25 >seq1201 Length=295393 Score = 257 bits (284), Expect = 2e-63 Identities = 578/850 (68%), Gaps = 35/850 (4%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| ||||| ||||||| || ||||| | || ||| | ||| || Sbjct 157055 ATTTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCTGAGGAGATTGATTTG 156996 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| || |||| ||| | | | | | || || |||| | || || || Sbjct 156995 TCCAAGGATCTCCACGACTGGAACAACAAGATCAAC-GATGATGAGAAGTACTTCATCTC 156937 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTG-TTGACAC 125196 |||||| | |||||||| |||| ||||| || |||||||| || || ||| |||| | Sbjct 156936 TCACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACCTGGTTGAG-C 156878 Query 125197 GATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCAT 125254 | |||||| || | ||| | || |||| | ||||| ||||| ||||| ||||| Sbjct 156877 GTTTCTCTGGCGAAGT--CCAGGTCCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCAT 156820 Query 125255 GATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC 125314 ||| |||||| | ||||| || | ||||| || || |||| |||||| || || Sbjct 156819 GATGGAGAACATTCACTCCGAGACTTACTCCCTTCTCATCGACACCTACATTAAGGAGCC 156760 Query 125315 G---CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAA 125371 || |||| | || ||||| ||||| |||||||| | || | || ||||| || Sbjct 156759 TGCCCAGCGTA--CCTAT-CTCTTCAACGCCATCGACACCATCCCCTGCATCCGTAAGAA 156703 Query 125372 GGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGT 125431 |||| | |||| | || |||||| ||| ||||| | | |||| | | || || Sbjct 156702 GGCTGACTGGGCCTTGCGCTGGATCACGGACACAAAGTCCACCTTCGCCCAGCGCCTCGT 156643 Query 125432 GGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCT 125491 || || |||||||| |||||||||||||| ||| ||| || ||||||| ||||| Sbjct 156642 TGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCT 156583 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 ||||||||| || ||||||||||| || || | |||||| | || || || || || Sbjct 156582 CAAGAAGCGTGGTCTCATGCCCGGTCTAACCTTCTCCAACGAGCTCATCTCCCGTGATGA 156523 Query 125552 GGGCCTACACTGTGACTTTGCCATTCTACTGT-TTCGCAACT--ATCTGCGTCCCGAGTG 125608 ||| || ||| ||||||||| || |||| || || || | | || ||| | Sbjct 156522 GGGTCTCCACACCGACTTTGCCTGCCTTCTGTACTCTCACCTGAAGCACCGCCCC---AG 156466 Query 125609 CAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 || | | | ||| ||| | ||| | |||||| || | ||| || ||||| Sbjct 156465 CA-AGCAGGTGAT--TGAGG------ATATTATCGTCGATGCTGTCAAGATCGAGCAAGA 156415 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 ||| || ||||| | || || | | | | |||||||||| ||| || ||| | Sbjct 156414 GTTCCTGACCGAGGCTCTGCCTTGCGCCCTCCTGGGCATGAACTCCAACCTGATGAAGCA 156355 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTA 125785 ||||| ||||| || || |||||||| || || | ||| || |||| | || Sbjct 156354 ATACATCGAGTTCGTCGCTGATCGTCTGTTGGTCG---CTCTCGGCAACGACAAGGTCTA 156298 Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 ||| | || ||||| || |||||| | ||| || || | || ||||||||||| Sbjct 156297 CAAATCGGCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTGGCAAGACCAACTT 156238 Query 125846 TTTCGAGAAG 125855 || |||||| Sbjct 156237 CTTTGAGAAG 156228 >seq211 Length=153984 Score = 129 bits (142), Expect = 9e-25 Identities = 310/464 (67%), Gaps = 10/464 (2%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| | || || ||||| || ||| Sbjct 109409 CAGGGTGGCAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGCATGCCGAC 109350 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || ||| | || | ||||| ||| ||| || |||| || ||| | ||| Sbjct 109349 GTCTTCGAGTTTTTGGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGTGCCCGTGAC 109290 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052 | || || || ||| | || ||| | ||||||||||| || || |||||| Sbjct 109289 CTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGCGAGTGGAGAAGAACGGTG-- 109232 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||| ||| || || || ||||| |||| |||| ||||| || Sbjct 109231 -ACTGGACACTGATGTGTCCCAACGAGTGCCCGGGTCTTGCCGACTGCTATGGCGAGGAA 109173 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 || || ||| |||| | ||||||| || ||| | || |||| | || | Sbjct 109172 TTCGAAGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGAAAGACCA--TGAAGG 109115 Query 97172 ACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTC 97230 | |||| || ||| | ||||| | ||| ||| ||||| || | || | ||| | Sbjct 109114 CCCAGAAGCTCTGGTATGCCATTCTCGAGGCCCAGACTGAGACCGGCAACCCTTTCATGC 109055 Query 97231 TCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||||| | || ||||| |||||||| | | |||||||| ||| Sbjct 109054 TCTACAAGGATCATGCCAACCGCAAGAGCAACCAGAAGAATCTCGGCACCATTCGAAGCT 108995 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 |||| || ||||||||||| | |||||| | | || |||||| Sbjct 108994 CCAACCTTTGCACGGAAATCATTGAGTACTCGGCCCCTGACGAG 108951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044712292640