Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq428 105 5e-18
seq632 104 2e-17
seq1544 89.7 4e-13
>seq428
Length=571
Score = 105 bits (116), Expect = 5e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| | |||||| || || || || || || ||||||||| | | | | |||||
Sbjct 356 AACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTC 415
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
| || || |||||| | |||||||| || || || || || |||||||||||
Sbjct 416 AAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTG 475
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
||| ||| |||| ||| | || ||||| ||||| | || || || | ||| ||||||||
Sbjct 476 AATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTT 535
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| || || ||||| || ||||| ||||| ||
Sbjct 536 CCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568
>seq632
Length=500
Score = 104 bits (114), Expect = 2e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||||||||| || || || || |||||||| ||| | |||| | ||||| || ||
Sbjct 226 ATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCTTCCAACTG 167
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||| ||||| | ||||| | |||||||| ||||||||||||||||| ||| ||
Sbjct 166 TTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGAATCTT 107
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
| || ||| ||||||| ||||| || || || || | || || ||||| || ||
Sbjct 106 GGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTTGCCCGT 47
Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364
|| || || || || || ||||||
Sbjct 46 GAGGGTCTTGACGAAGATCTGCATA 22
>seq1544
Length=892
Score = 89.7 bits (98), Expect = 4e-13
Identities = 144/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||||||||| || || || || |||||||| || ||| | | |||| || | ||
Sbjct 632 ATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCGAGCTG 691
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||| || ||| | |||| |||||| ||||| ||||||||||| ||||| || ||
Sbjct 692 TTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTT 751
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| || | || ||||| || | | || || || | || ||||| || || ||
Sbjct 752 AGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCGGT 811
Query 15340 CAGAGTTTTTACAAAAATTTGCATATT 15366
||| ||||| || || |||||||| ||
Sbjct 812 CAGGGTTTTAACGAATATTTGCATCTT 838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362172296411724
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |