Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq428 105 5e-18 seq632 104 2e-17 seq1544 89.7 4e-13 >seq428 Length=571 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || || || || ||||||||| | | | | ||||| Sbjct 356 AACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTC 415 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || || |||||| | |||||||| || || || || || ||||||||||| Sbjct 416 AAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTG 475 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| |||| ||| | || ||||| ||||| | || || || | ||| |||||||| Sbjct 476 AATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTT 535 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || ||||| || ||||| ||||| || Sbjct 536 CCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568 >seq632 Length=500 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || || || |||||||| ||| | |||| | ||||| || || Sbjct 226 ATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCTTCCAACTG 167 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| ||||| | ||||| | |||||||| ||||||||||||||||| ||| || Sbjct 166 TTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGAATCTT 107 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| ||||||| ||||| || || || || | || || ||||| || || Sbjct 106 GGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTTGCCCGT 47 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || || || || |||||| Sbjct 46 GAGGGTCTTGACGAAGATCTGCATA 22 >seq1544 Length=892 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||| || || || || |||||||| || ||| | | |||| || | || Sbjct 632 ATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCGAGCTG 691 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || ||| | |||| |||||| ||||| ||||||||||| ||||| || || Sbjct 692 TTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTT 751 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || | || ||||| || | | || || || | || ||||| || || || Sbjct 752 AGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCGGT 811 Query 15340 CAGAGTTTTTACAAAAATTTGCATATT 15366 ||| ||||| || || |||||||| || Sbjct 812 CAGGGTTTTAACGAATATTTGCATCTT 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362172296411724