Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq650 105 6e-18 >seq650 Length=72315 Score = 105 bits (116), Expect = 6e-18 Identities = 193/278 (69%), Gaps = 20/278 (7%) Strand=Plus/Minus Query 99502 CGCCCCCAGCCCAGGCTGGCGTGCGAGCCCGGCGCCCCGCTC-CGCACGGTGAGCGAGGT 99560 ||| ||||||| || | | ||||||| ||| | || | || || || || |||| Sbjct 30389 CGCTCCCAGCCGCGGTTCGAGTGCGAGTT-GGCCTCGTGCGCGCGGACCGTCAGGCAGGT 30331 Query 99561 GTTGAGCAGCAGCACGCCGCGGCGCGCCCA---GGCCTCCAGGCAGCCGTGCTGCGGCCG 99617 |||||||| |||||||||||| |||||| || | ||||| ||||| || || | Sbjct 30330 GTTGAGCATGAGCACGCCGCGGTCCGCCCACGGGGTCAGCAGGCCGCCGTTCTTGGGAGG 30271 Query 99618 CGGGGTCCCG---GGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAG------GCT 99668 |||| | | ||| ||| |||| | ||| ||| ||||||| ||| | Sbjct 30270 CGGGCTGAAGCTCGGGTAGTCCTTCCTGAGGGCAATGTACATGTTCTTGAGCGAAGGGGG 30211 Query 99669 GGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCT 99728 || |||| |||| | |||| ||| |||||| ||||||||||| || |||| | Sbjct 30210 GGCCGGGGTCGG---GGGGCGG---ACGGAGAAGGCGAGGCCGTGGGCTTGGTTGTGGTT 30157 Query 99729 GTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGACGT 99766 |||||||||||| ||||| | |||||||| ||||||| Sbjct 30156 GTGGTAGGGGTCTTGGCCGACAATGACGACTTTGACGT 30119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440890580420640