Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_005261.2
Length=137821
Score E
Sequences producing significant alignments: (Bits) Value
seq650 105 6e-18
>seq650
Length=72315
Score = 105 bits (116), Expect = 6e-18
Identities = 193/278 (69%), Gaps = 20/278 (7%)
Strand=Plus/Minus
Query 99502 CGCCCCCAGCCCAGGCTGGCGTGCGAGCCCGGCGCCCCGCTC-CGCACGGTGAGCGAGGT 99560
||| ||||||| || | | ||||||| ||| | || | || || || || ||||
Sbjct 30389 CGCTCCCAGCCGCGGTTCGAGTGCGAGTT-GGCCTCGTGCGCGCGGACCGTCAGGCAGGT 30331
Query 99561 GTTGAGCAGCAGCACGCCGCGGCGCGCCCA---GGCCTCCAGGCAGCCGTGCTGCGGCCG 99617
|||||||| |||||||||||| |||||| || | ||||| ||||| || || |
Sbjct 30330 GTTGAGCATGAGCACGCCGCGGTCCGCCCACGGGGTCAGCAGGCCGCCGTTCTTGGGAGG 30271
Query 99618 CGGGGTCCCG---GGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAG------GCT 99668
|||| | | ||| ||| |||| | ||| ||| ||||||| ||| |
Sbjct 30270 CGGGCTGAAGCTCGGGTAGTCCTTCCTGAGGGCAATGTACATGTTCTTGAGCGAAGGGGG 30211
Query 99669 GGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCT 99728
|| |||| |||| | |||| ||| |||||| ||||||||||| || |||| |
Sbjct 30210 GGCCGGGGTCGG---GGGGCGG---ACGGAGAAGGCGAGGCCGTGGGCTTGGTTGTGGTT 30157
Query 99729 GTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGACGT 99766
|||||||||||| ||||| | |||||||| |||||||
Sbjct 30156 GTGGTAGGGGTCTTGGCCGACAATGACGACTTTGACGT 30119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 440890580420640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |