Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq632 163 7e-35
seq428 138 3e-27
seq643 105 2e-17
>seq632
Length=500
Score = 163 bits (180), Expect = 7e-35
Identities = 164/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | ||||| || ||||| || || ||||| || | ||||| || ||
Sbjct 235 AAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATC 176
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| | ||||| |||||||| || | |||||||| ||||| || ||||||||||| ||
Sbjct 175 TTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTC 116
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| ||||| |||||||||| ||||| || || || ||||| || || || ||
Sbjct 115 CTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGT 56
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || || || || || ||||||||
Sbjct 55 TTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23
>seq428
Length=571
Score = 138 bits (152), Expect = 3e-27
Identities = 171/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | ||||| || || ||||| | |||||||| ||||| ||||| || ||
Sbjct 336 ATTCCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCG 395
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
| | || | || ||||| || || || ||||| ||||| | | ||| ||||| |||
Sbjct 396 GCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGA 455
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || |||||||| || |||||||| | || ||||| || | ||| ||||| ||
Sbjct 456 GGGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCG 515
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| || || || || || || || || ||||| || || ||||||||||||
Sbjct 516 ACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTTG 569
>seq643
Length=80414
Score = 105 bits (116), Expect = 2e-17
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| ||||| || || ||||| || || || | ||||| || || || ||||| || ||
Sbjct 65270 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 65329
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | ||| || || || || || || || || ||||| ||||| | || |||||
Sbjct 65330 ATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 65389
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | ||| ||| || || ||||| || || ||||||||||| || || || || ||
Sbjct 65390 TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACG 65449
Query 104549 AATATCTGCAT 104559
|| ||||||||
Sbjct 65450 AAGATCTGCAT 65460
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151375327415312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |