Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1544 127 2e-24 seq428 111 1e-19 seq632 104 2e-17 seq442 82.4 7e-11 >seq1544 Length=892 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||| | ||| | ||| |||||||| || | ||| || || || ||| | | Sbjct 393 CGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCCA 452 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| ||||||| || || |||||||| ||||| || ||||| || Sbjct 453 TCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTTA 512 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| | ||| || |||| || || || | |||||| Sbjct 513 TCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAACCTCGAGGGTGATG 572 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || || |||||||||||||| Sbjct 573 GTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | ||| | || || ||||| || | || ||||| Sbjct 153 CCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCA 212 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || |||||||| || || ||||||| || || |||||||| |||||| Sbjct 213 AGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGA 272 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || || || | || || ||||| ||| | | | ||||| | | ||||| Sbjct 273 ATACCCTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGACC 332 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || ||||| || |||||||| ||||||||||||||||| Sbjct 333 TCGAGGGTAATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| |||||||||||| | ||||| | | |||||| || || ||||| ||||| ||| Sbjct 681 TCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTG 740 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | ||| ||||||| ||||| || | |||||| Sbjct 741 TCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATG 800 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||| || || ||||| || || || ||||| Sbjct 801 GTCTTTCCGGTCAGGGTTTTAACGAATATTTGCAT 835 >seq428 Length=571 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | |||||||||||| || | || |||||| || ||| ||| || | Sbjct 358 CAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAA 417 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || || | || || || | |||||||| ||||| |||||||||||||| | || Sbjct 418 GCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGAA 477 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || | |||||| | ||| ||||| | ||||| || | ||||||||||| | Sbjct 478 TCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCC 537 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||||||| || |||||||| Sbjct 538 CGGTTAGGGTTTTCACGAAAATCTGCAT 565 >seq632 Length=500 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||| ||||| || | ||| || ||| || || || ||| |||| |||||| || Sbjct 219 GTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCTTCCAACTGTTTACCA 160 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| ||||| || || || || ||||| ||||||||||| | ||| || || || Sbjct 159 GCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTA 100 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||| ||| | | || || |||| ||||| ||||| || || || || Sbjct 99 ACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTTGCCCGTGAGGGTC 40 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 39 TTGACGAAGATCTGCAT 23 >seq442 Length=625744 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||||||||||| || | ||| ||||| || ||| | |||||| Sbjct 417720 ACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCCTCA 417779 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| | || || | | |||||| || || || || || || || || | Sbjct 417780 AGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGG 417839 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| || | ||| || || | || || || | |||||||| || Sbjct 417840 ATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTG 417899 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||||| || || || || |||||||||||| Sbjct 417900 CCAGTGAGGGTCTTGACGAAGATCTGCATG 417929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448282435907040