Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq602 143 4e-30
seq211 114 2e-21
seq768 105 1e-18
>seq602
Length=510
Score = 143 bits (158), Expect = 4e-30
Identities = 144/187 (77%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517
|||||||||| || |||||||||||||| ||||| |||||||| || | |||||||| |
Sbjct 386 GAGATAACATTCAGGGAATCACCAAGCCTGCTATTCGTCGTCTCGCAAGGCGTGGTGGCG 327
Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577
|||||||| || || | | |||||||| | ||| | |||| | |||||||| ||
Sbjct 326 TCAAGCGTATCAGCGGTCTAATTTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTTG 267
Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637
||| ||| |||| ||||||| | ||| || ||||| ||| ||||||||||| |||
Sbjct 266 AGAACGTCATCCGTGATGCTGTGACCTACACTGAGCATGCTCGCCGTAAGACTGTTACCG 207
Query 16638 CCATGGA 16644
| |||||
Sbjct 206 CGATGGA 200
>seq211
Length=153984
Score = 114 bits (126), Expect = 2e-21
Identities = 88/102 (86%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| ||||
Sbjct 136507 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCTGCTA 136565
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||||||||| ||||||||||| || ||||||||| ||||||
Sbjct 136566 TCCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 136607
>seq768
Length=516019
Score = 105 bits (116), Expect = 1e-18
Identities = 86/102 (84%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| |||| ||| | | || || |||||||| || ||||||||||| ||||
Sbjct 153045 CGCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 152987
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
|||| ||||| |||||||||||||| ||||||||| | ||||
Sbjct 152986 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 152945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073770023852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |