Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq602 143 4e-30 seq211 114 2e-21 seq768 105 1e-18 >seq602 Length=510 Score = 143 bits (158), Expect = 4e-30 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || |||||||||||||| ||||| |||||||| || | |||||||| | Sbjct 386 GAGATAACATTCAGGGAATCACCAAGCCTGCTATTCGTCGTCTCGCAAGGCGTGGTGGCG 327 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 |||||||| || || | | |||||||| | ||| | |||| | |||||||| || Sbjct 326 TCAAGCGTATCAGCGGTCTAATTTATGAAGAAACTCGCGGTGTTCTCAAGATCTTTCTTG 267 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| |||| ||||||| | ||| || ||||| ||| ||||||||||| ||| Sbjct 266 AGAACGTCATCCGTGATGCTGTGACCTACACTGAGCATGCTCGCCGTAAGACTGTTACCG 207 Query 16638 CCATGGA 16644 | ||||| Sbjct 206 CGATGGA 200 >seq211 Length=153984 Score = 114 bits (126), Expect = 2e-21 Identities = 88/102 (86%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| |||| Sbjct 136507 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCTGCTA 136565 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| ||||||||||| || ||||||||| |||||| Sbjct 136566 TCCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 136607 >seq768 Length=516019 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| | | || || |||||||| || ||||||||||| |||| Sbjct 153045 CGCCAAGCGTCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTA 152987 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||| ||||| |||||||||||||| ||||||||| | |||| Sbjct 152986 TCCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 152945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073770023852