Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq211 158 2e-33 >seq211 Length=153984 Score = 158 bits (174), Expect = 2e-33 Identities = 578/892 (65%), Gaps = 20/892 (2%) Strand=Plus/Plus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 |||||||||| | ||| || |||| | || |||||| ||||| ||||||||||| ||| Sbjct 109213 GGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATC 109272 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 ||||| || | || || || | || | ||||| || || ||||| || Sbjct 109273 CAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 109332 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 || | ||| | | | || | |||||| || || | ||| ||||| | | || || Sbjct 109333 TCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGG 109392 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || ||||| || | || | |||||||| || | || | | ||| || Sbjct 109393 CGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGG 109452 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--AT 63480 ||| |||||| || | |||||||| |||| ||| ||| ||| ||||||| || Sbjct 109453 GTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGG 109512 Query 63481 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63540 | ||| |||||| || || || |||||||| || || | ||||| || | | Sbjct 109513 TGGACATT--TAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAG 109570 Query 63541 TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63600 |||| ||||| ||||| || || || |||||| | ||||| ||| |||| | Sbjct 109571 TGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCT 109630 Query 63601 GGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| | | ||| || || || || || || || |||||||| || || || || Sbjct 109631 -GTGCCTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCACTTGCTC 109689 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTAC 63715 || | | ||||| |||||||| | || | ||| || |||| || || Sbjct 109690 GACATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCCCAGATG----CCAAC 109745 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775 || || ||||| | ||||||||| ||||| || | |||||| | | || | | Sbjct 109746 GGCAACGCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGAAG 109805 Query 63776 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63835 |||||| | ||||| || ||||| || || || | ||| ||||| || ||||||| Sbjct 109806 ATAGGATCTCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAAAC 109865 Query 63836 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAA 63894 || | || | || | ||||| | | | || ||| || | ||| | || Sbjct 109866 GATGGCAGAATCAAGCTCCTCCTTGTGCCTCATGACACAATCGTACGT-CTCCTTCGCAA 109924 Query 63895 TAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTT 63954 | ||||| || ||||| || || || ||||||| | | | ||| | ||| Sbjct 109925 TCATCGGGGACAAGCGGCCATTCTTGGGGTTCACATAGTGGTAGAGATCGCTGACGACTG 109984 Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 | || | || || || | |||||| || || || || || || | ||| || || | Sbjct 109985 AAGACCATTGCTTCTTCGTCTGCTTGTGGAGGTTGGAGACTGCAATACGGGCAGCAAGGA 110044 Query 64015 TGGCATAATCCGGATGTTGTG-TAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064 ||||||| || ||||| |||| ||| || || ||| || ||||||| ||| Sbjct 110045 TGGCATAGTCGGGATG-TGTGACAGT-CATGTAGGCGGCAGTTTCGGCGGCC 110094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622935021382240