Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq211 158 2e-33
>seq211
Length=153984
Score = 158 bits (174), Expect = 2e-33
Identities = 578/892 (65%), Gaps = 20/892 (2%)
Strand=Plus/Plus
Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242
|||||||||| | ||| || |||| | || |||||| ||||| ||||||||||| |||
Sbjct 109213 GGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATC 109272
Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302
||||| || | || || || | || | ||||| || || ||||| ||
Sbjct 109273 CAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGG 109332
Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362
|| | ||| | | | || | |||||| || || | ||| ||||| | | || ||
Sbjct 109333 TCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGG 109392
Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422
|| ||||| || ||||| || | || | |||||||| || | || | | ||| ||
Sbjct 109393 CGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGG 109452
Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--AT 63480
||| |||||| || | |||||||| |||| ||| ||| ||| ||||||| ||
Sbjct 109453 GTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGG 109512
Query 63481 TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 63540
| ||| |||||| || || || |||||||| || || | ||||| || | |
Sbjct 109513 TGGACATT--TAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAG 109570
Query 63541 TGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT 63600
|||| ||||| ||||| || || || |||||| | ||||| ||| |||| |
Sbjct 109571 TGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCT 109630
Query 63601 GGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659
||| | | ||| || || || || || || || |||||||| || || || ||
Sbjct 109631 -GTGCCTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGAAGCACTTGCTC 109689
Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTAC 63715
|| | | ||||| |||||||| | || | ||| || |||| || ||
Sbjct 109690 GACATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCCCAGATG----CCAAC 109745
Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775
|| || ||||| | ||||||||| ||||| || | |||||| | | || | |
Sbjct 109746 GGCAACGCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCCATCAAGCTTGAGAAG 109805
Query 63776 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63835
|||||| | ||||| || ||||| || || || | ||| ||||| || |||||||
Sbjct 109806 ATAGGATCTCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTTGAAGTCGCGGTCGTAAAC 109865
Query 63836 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAA 63894
|| | || | || | ||||| | | | || ||| || | ||| | ||
Sbjct 109866 GATGGCAGAATCAAGCTCCTCCTTGTGCCTCATGACACAATCGTACGT-CTCCTTCGCAA 109924
Query 63895 TAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTT 63954
| ||||| || ||||| || || || ||||||| | | | ||| | |||
Sbjct 109925 TCATCGGGGACAAGCGGCCATTCTTGGGGTTCACATAGTGGTAGAGATCGCTGACGACTG 109984
Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014
| || | || || || | |||||| || || || || || || | ||| || || |
Sbjct 109985 AAGACCATTGCTTCTTCGTCTGCTTGTGGAGGTTGGAGACTGCAATACGGGCAGCAAGGA 110044
Query 64015 TGGCATAATCCGGATGTTGTG-TAGTACAAGT-GGCTGCTATTTCGGCTGCC 64064
||||||| || ||||| |||| ||| || || ||| || ||||||| |||
Sbjct 110045 TGGCATAGTCGGGATG-TGTGACAGT-CATGTAGGCGGCAGTTTCGGCGGCC 110094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622935021382240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |