Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1201 113 4e-20 seq428 105 6e-18 >seq1201 Length=295393 Score = 113 bits (124), Expect = 4e-20 Identities = 315/475 (66%), Gaps = 25/475 (5%) Strand=Plus/Plus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || ||| ||| | ||||| || ||||| || || |||||||| ||||||| ||||| | Sbjct 156210 CTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAGATGTTCTC 156269 Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761 ||| || ||||| || || || | ||| | |||||||| ||| | ||| |||||| Sbjct 156270 CATGAAGTCGAAGGGGTTGGCCGATTTGTAGACCTTGTCGTTGCCGAGAGCGACCAACAG 156329 Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACAT-GGATTGCGAATTCATGCCCAACATAG 119820 ||||| || || ||||||||||||| ||| | ||| || |||||||||| | | Sbjct 156330 ACGATCAGCGACGAACTCGATGTATTGCTTCATCAGGTTG-GAGTTCATGCCCAGGAGGG 156388 Query 119821 CGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTAC--AAACAT 119878 || || | ||| | ||| | ||| || | || || | ||| || || || || || Sbjct 156389 CGCAAGGCAGAGCCTCGGTCAGGAACTCTTGCTCGATCTTGACAGCATCGACGATAATAT 156448 Query 119879 ACTCAA-CACCTTGGTCTTGGAGAGCTTGTTCTTTTCGGGAATATATTTATTGTAGTATA 119937 ||||| ||||| |||| | | || | ||| || | | ||| | Sbjct 156449 CCTCAATCACCT---GCTTGCTGGGGCGGTGC--TTCAGG-------TGAGAGTACAGAA 156496 Query 119938 GACAAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCA 119997 | || |||||||||||||| || || || || | ||| ||||| |||||| | | || | Sbjct 156497 GGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTA 156556 Query 119998 AGCCGGGTA-GAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCAAAACTACCA 120056 ||||| | ||| || ||| |||| || |||| | || ||| ||| Sbjct 156557 GACCGGGCATGAG-ACCACGCTTC------TTGAGCCAGAAGATGGAGGCGAAAGCACCG 156609 Query 120057 GaaaaaaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAATGTGG 120111 || |||| ||| |||||| ||||| || || | ||| | |||||| |||| Sbjct 156610 CTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGTGG 156664 >seq428 Length=571 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | || || ||||| |||| || ||| | |||||| |||| | || Sbjct 569 CAAAATGCAGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAG 510 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | |||||||||||| | ||||| |||||| ||||||||||| || ||||| || Sbjct 509 CAGCGACACCATCGACAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCTCCGGA 450 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || | | |||| || || || || || ||||||| | | | | ||| || Sbjct 449 TCAGCAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGATTA 390 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || || ||||||||| | ||||| || || || ||| | || |||| Sbjct 389 CAATATCCAGAAGGAATCTACTCTTCATCTTGTTCTCAGGCTTCGTGGTGGAA 337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478653042150080