Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq1201 113 4e-20
seq428 105 6e-18
>seq1201
Length=295393
Score = 113 bits (124), Expect = 4e-20
Identities = 315/475 (66%), Gaps = 25/475 (5%)
Strand=Plus/Plus
Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701
|| ||| ||| | ||||| || ||||| || || |||||||| ||||||| ||||| |
Sbjct 156210 CTGGTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGAGAGATGTTCTC 156269
Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761
||| || ||||| || || || | ||| | |||||||| ||| | ||| ||||||
Sbjct 156270 CATGAAGTCGAAGGGGTTGGCCGATTTGTAGACCTTGTCGTTGCCGAGAGCGACCAACAG 156329
Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACAT-GGATTGCGAATTCATGCCCAACATAG 119820
||||| || || ||||||||||||| ||| | ||| || |||||||||| | |
Sbjct 156330 ACGATCAGCGACGAACTCGATGTATTGCTTCATCAGGTTG-GAGTTCATGCCCAGGAGGG 156388
Query 119821 CGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTAC--AAACAT 119878
|| || | ||| | ||| | ||| || | || || | ||| || || || || ||
Sbjct 156389 CGCAAGGCAGAGCCTCGGTCAGGAACTCTTGCTCGATCTTGACAGCATCGACGATAATAT 156448
Query 119879 ACTCAA-CACCTTGGTCTTGGAGAGCTTGTTCTTTTCGGGAATATATTTATTGTAGTATA 119937
||||| ||||| |||| | | || | ||| || | | ||| |
Sbjct 156449 CCTCAATCACCT---GCTTGCTGGGGCGGTGC--TTCAGG-------TGAGAGTACAGAA 156496
Query 119938 GACAAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCA 119997
| || |||||||||||||| || || || || | ||| ||||| |||||| | | || |
Sbjct 156497 GGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTA 156556
Query 119998 AGCCGGGTA-GAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCAAAACTACCA 120056
||||| | ||| || ||| |||| || |||| | || ||| |||
Sbjct 156557 GACCGGGCATGAG-ACCACGCTTC------TTGAGCCAGAAGATGGAGGCGAAAGCACCG 156609
Query 120057 GaaaaaaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAATGTGG 120111
|| |||| ||| |||||| ||||| || || | ||| | |||||| ||||
Sbjct 156610 CTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGTGG 156664
>seq428
Length=571
Score = 105 bits (116), Expect = 6e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824
||||||||| | || || ||||| |||| || ||| | |||||| |||| | ||
Sbjct 569 CAAAATGCAGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAG 510
Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884
| |||||||||||| | ||||| |||||| ||||||||||| || ||||| ||
Sbjct 509 CAGCGACACCATCGACAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCTCCGGA 450
Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944
||| || | | |||| || || || || || ||||||| | | | | ||| ||
Sbjct 449 TCAGCAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGATTA 390
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|| || || || ||||||||| | ||||| || || || ||| | || ||||
Sbjct 389 CAATATCCAGAAGGAATCTACTCTTCATCTTGTTCTCAGGCTTCGTGGTGGAA 337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478653042150080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |