Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq428 140 3e-28 seq442 132 5e-26 seq835 116 3e-21 seq1544 111 1e-19 seq643 111 1e-19 seq211 111 1e-19 seq632 93.3 4e-14 >seq428 Length=571 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| || || ||||||||| || |||||| || || |||||||| || Sbjct 369 GTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCA 428 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || ||||||||||| ||||||||||| ||||||||||| || || |||| Sbjct 429 GCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGTCTTG 488 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || ||| || ||||| |||| ||| | |||||| |||||||| ||| Sbjct 489 ACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTT 548 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 549 TTCACGAAAATCTGCAT 565 >seq442 Length=625744 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | || ||||| || || | |||||||||||| ||||||||||| ||| Sbjct 417188 GCCTCCACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGA 417247 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| |||||||| || || |||| | |||||||||||| || || Sbjct 417248 GAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGG 417307 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 417308 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCAC 417367 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || ||||| || || || |||||||||||||| Sbjct 417368 CTCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||| || || || || | ||| || ||||| || ||||||||||| Sbjct 417701 GCCACCGCGGAGACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGA 417760 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| ||| | || | ||| |||||||| || || Sbjct 417761 CAAGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGG 417820 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || || || ||| || ||| | | || | ||||||| ||||| | Sbjct 417821 GATGCCCTCCTTATCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCAC 417880 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | ||| || || || || || || ||||| |||||||||| Sbjct 417881 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGA 417930 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || || || || || | ||| |||||||| ||||||||||| ||| Sbjct 417417 CCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 417476 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| |||| | |||||||||||| || || Sbjct 417477 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGA 417536 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||||| | || | ||| ||| | ||||| | Sbjct 417537 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACC 417596 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 |||| ||| | ||| || || || ||||| || || Sbjct 417597 TCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGAC 417631 >seq835 Length=459924 Score = 116 bits (128), Expect = 3e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | |||||| |||||| ||||||||||| ||| ||| Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || ||||| || || ||||| ||| || ||||| | | Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||||| ||| ||||| || || || || |||| Sbjct 159392 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 159333 Query 131225 AA 131226 || Sbjct 159332 AA 159331 >seq1544 Length=892 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || ||||||||| | || | |||||||||||| || || |||||||| Sbjct 151 AGCCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAG 210 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | || | ||| || |||||||| || || |||| || | |||||| ||||||| Sbjct 211 CAAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAG 270 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || || || || || ||| || ||| | | || | || || | | ||||| Sbjct 271 GAATACCCTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGA 330 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||||||||||| ||||| || || || |||||||| Sbjct 331 CCTCGAGGGTAATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| | || | || || ||||| || |||||||| || | Sbjct 381 CCACCACGAAGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCC 440 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||||| |||||||| || || |||| || | |||||| ||||||||| Sbjct 441 AAAGTCCTTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGG 500 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||||| | ||| | Sbjct 501 ATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAACC 560 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | |||||| ||||| || || || || || |||||||| Sbjct 561 TCGAGGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 >seq643 Length=80414 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||||| || | || | ||| |||||| || |||||||| ||| Sbjct 65234 CCTCCACGCAGGCGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 65293 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | ||||||||||| || ||| Sbjct 65294 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 65353 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 65354 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 65413 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || ||||| || || || || ||||| |||||||||| Sbjct 65414 TCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGA 65462 >seq211 Length=153984 Score = 111 bits (122), Expect = 1e-19 Identities = 334/508 (66%), Gaps = 12/508 (2%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||||||||| || ||||| || |||||| || | ||| || ||| | || Sbjct 108355 TTGACAACCTGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGC 108414 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| | ||||| |||||||| || || | || | ||||| |||||| || || Sbjct 108415 TCAAAGCATTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACG 108474 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || || |||| || |||| |||||| | |||||| || | | |||| ||||| Sbjct 108475 AGCAAGCTGTTACGCACACCATGCTGCTTGATCTGTTCCTTGAGAGAATCCCAGTCCCAG 108534 Query 145238 AG--CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 || || || ||| | || |||||||||| || || | | ||||| | | ||| Sbjct 108535 AGGTCGGAG--GGCTTGACTCCCCACATGTCATATTGAAGGACGCCCTGTGAGACTGGGG 108592 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCT--CCAG 145353 ||||| | | || || ||||| ||||| |||| || ||| | | || Sbjct 108593 AGCCTTCATAAGACGAATAGGTGCCCTCCTCCTTGGCTAGCT-GC-ACTGACATGGTGAG 108650 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAG--CAGCATCGCTTCATCGCTC 145411 ||| || || || |||||| || | | |||| || || | || ||| | Sbjct 108651 AGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTCAGTTCACGA--GCCTCAGGCGAC 108708 Query 145412 TCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATG 145471 ||| |||||| |||| | || ||||| || || ||||| | || | ||| ||| Sbjct 108709 TCGAACGGCAGTCGCAAAGCCAAGAATGCATCAGCAAGACCCTGGACACCGAGGCCAATG 108768 Query 145472 GGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATA 145531 |||||||| ||||||||| | | ||| | || ||||| | || |||||| Sbjct 108769 GGCCGATGGCGCATGTTGCTGTTGCGAGCCTCCGGGACGGGATAGTGGTTGACGTCGATG 108828 Query 145532 ATTTTATTCAAGTTTCGCACTACTACCT 145559 || |||||| ||| || || || |||| Sbjct 108829 ATCCTATTCAGGTTGCGAACAACAACCT 108856 >seq632 Length=500 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | ||| |||||||| || |||||||| ||| | Sbjct 249 CCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 190 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || | ||| || || || |||| || | ||| ||||| || || Sbjct 189 AATGTTCTGCCA-TCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGG 131 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 |||||||||||||| ||| | | |||| | | | || | |||||| ||| ||| | Sbjct 130 AATTCCTTCTTTGTC-CTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAA 72 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || || || || || ||||| |||||||| Sbjct 71 CCTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472003572149760