Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq428 102 7e-17 seq632 89.7 4e-13 seq442 89.7 4e-13 >seq428 Length=571 Score = 102 bits (112), Expect = 7e-17 Identities = 166/236 (70%), Gaps = 10/236 (4%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || || || ||||| || || ||||| |||||| Sbjct 339 CCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCC 398 Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824 | ||| |||||| || | || || || || |||| | ||||| || ||| Sbjct 399 AAGGT----GCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGG 454 Query 16825 AGGCACGCCCTCTTTGTCGGCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 ||| | || |||||||| ||| ||| | ||| || | | | | ||||||| | || Sbjct 455 AGGGATACCTTCTTTGTCTTGAATCTTGGT-CTTGACATTGTCGATGGTGTCGCTGCTCT 513 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || | |||||||||||| ||||| || ||||| || ||||||||||||||| Sbjct 514 CGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTTG 569 >seq632 Length=500 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || |||||||| || ||||||||||||| || ||| || | || Sbjct 234 AGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCT 175 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| ||||| || ||| | || | | ||||||||| || | || |||||||| Sbjct 174 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCC 115 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | ||| || | |||||| || | ||||| | Sbjct 114 TGAATCTTGGCT--TTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTG 57 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941 |||| || || || || ||||| || |||||||| |||| Sbjct 56 TTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATAGTGTA 17 >seq442 Length=625744 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| || || || |||||||| || ||||||||||||| Sbjct 417189 CCTCCACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 417248 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || || || ||| | ||||| ||||| ||||| || Sbjct 417249 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGG 417308 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| || | ||| || | | | | ||||| | |||| Sbjct 417309 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACC 417368 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || || |||||||| || || || ||||||||||| Sbjct 417369 TCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405080278516360