Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq428 102 7e-17
seq632 89.7 4e-13
seq442 89.7 4e-13
>seq428
Length=571
Score = 102 bits (112), Expect = 7e-17
Identities = 166/236 (70%), Gaps = 10/236 (4%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || ||||| || || | ||| || || || ||||| || || ||||| ||||||
Sbjct 339 CCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCC 398
Query 16769 ATGGTTTTGGCGTCC----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCAC 16824
| ||| |||||| || | || || || || |||| | ||||| || |||
Sbjct 399 AAGGT----GCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGG 454
Query 16825 AGGCACGCCCTCTTTGTCGGCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883
||| | || |||||||| ||| ||| | ||| || | | | | ||||||| | ||
Sbjct 455 AGGGATACCTTCTTTGTCTTGAATCTTGGT-CTTGACATTGTCGATGGTGTCGCTGCTCT 513
Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
| || | |||||||||||| ||||| || ||||| || |||||||||||||||
Sbjct 514 CGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTTG 569
>seq632
Length=500
Score = 89.7 bits (98), Expect = 4e-13
Identities = 153/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || || |||||||| || ||||||||||||| || ||| || | ||
Sbjct 234 AGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCT 175
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
||||| ||||| || ||| | || | | ||||||||| || | || ||||||||
Sbjct 174 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCC 115
Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | | ||| || | |||||| || | ||||| |
Sbjct 114 TGAATCTTGGCT--TTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTG 57
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGTA 16941
|||| || || || || ||||| || |||||||| ||||
Sbjct 56 TTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATAGTGTA 17
>seq442
Length=625744
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || |||| || || || |||||||| || |||||||||||||
Sbjct 417189 CCTCCACGGAGGCGAAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAG 417248
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||| | || || || ||| | ||||| ||||| ||||| ||
Sbjct 417249 AGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGG 417308
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| || | ||| || | | | | ||||| | ||||
Sbjct 417309 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACC 417368
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||| || || || |||||||| || || || |||||||||||
Sbjct 417369 TCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405080278516360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |