Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq307 131 1e-25 seq1201 125 5e-24 seq643 95.1 8e-15 seq1544 89.7 3e-13 seq428 89.7 3e-13 seq442 87.8 1e-12 seq632 82.4 5e-11 >seq307 Length=625 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 137 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 78 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 77 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 43 >seq1201 Length=295393 Score = 125 bits (138), Expect = 5e-24 Identities = 204/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 |||||| ||||| |||||||| ||| || | ||||| ||||||| ||||| || Sbjct 56538 GGACGCTTTCTATCGCTACAAGATGGAAAAGCTCGTCACCAAGATCGAGGGCAAGGGCAA 56479 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 |||||| || ||||||||||||||| || || ||| || | || | || |||| Sbjct 56478 CGGTATCAAGACCGTCATTGTCAACCTGAGCAGCGTTGCTCAGTCTCTTGCCCGTCCTGG 56419 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | |||| | || || || || | ||| || ||||| ||||| | | || | | Sbjct 56418 CGCCTATGTTATCAAGTACTTTGGCTTCGAGCTGGGCGCCCAGACAAACGTCGACCCCGC 56359 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 |||| |||| ||| | ||||| || || ||| | || |||||||| ||| ||||| Sbjct 56358 TGACGACCGCTGGATCATCAACGGTTCTCACAACGCCGCTAAGCTGCAAGACCACCTTGA 56299 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||| || |||||| || || || | | ||| | ||||| |||||||| Sbjct 56298 CGGCTTCATCAACAAGTTCGTTCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 56245 >seq643 Length=80414 Score = 95.1 bits (104), Expect = 8e-15 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 || || ||||||||||| || || ||||| || || | || |||| || | || Sbjct 65258 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGC 65317 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 |||||||| || || ||||| || || |||| ||||| ||| || |||||| || || Sbjct 65318 TTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 65377 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | || || || | || || || | || ||||| |||||||| Sbjct 65378 GACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTG 65437 Query 38295 AAGGTTTTCACGAATATCTGCATGTTT 38321 | ||| || ||||| ||||||||| || Sbjct 65438 AGGGTCTTGACGAAGATCTGCATGATT 65464 >seq1544 Length=892 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||||||||| | |||||||| ||||| || || ||||| |||| Sbjct 379 TACCACCACGAAGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAG 438 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| | | | || || | || ||||||||||| || | | || ||||| | | Sbjct 439 CCAAAGTCCTTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAG 498 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| || ||| || || |||||| || | || ||||| ||| |||| Sbjct 499 GGATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAA 558 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || ||||| || || | || || || || |||||||| Sbjct 559 CCTCGAGGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||| || ||||| || || ||||| |||| | | ||| |||| || | || Sbjct 632 ATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCGAGCTG 691 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||||||| || || || ||||| || || | ||| | ||||| |||||| || || Sbjct 692 TTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTT 751 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| || || | || || || ||| || || || | || || || || || || Sbjct 752 AGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCGGT 811 Query 38294 CAAGGTTTTCACGAATATCTGCATGTT 38320 || |||||| |||||||| ||||| || Sbjct 812 CAGGGTTTTAACGAATATTTGCATCTT 838 >seq428 Length=571 Score = 89.7 bits (98), Expect = 3e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| ||||| || ||||||||||| | ||| ||| | || || | || Sbjct 362 ATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTG 421 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 || || || || || | || || ||||| | |||| ||||||||||| ||| || Sbjct 422 CTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTT 481 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||| | || || || | || || || || | || || ||||| || || Sbjct 482 GGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGT 541 Query 38294 CAAGGTTTTCACGAATATCTGCATGTT 38320 | |||||||||||| |||||||| || Sbjct 542 TAGGGTTTTCACGAAAATCTGCATTTT 568 >seq442 Length=625744 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||| ||||| || ||||| || || |||||||||||| Sbjct 417702 CCACCGCGGAGACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGAC 417761 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | || || ||||| || || || ||||| || |||| |||| Sbjct 417762 AAGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGG 417821 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || || ||| || || ||||||||| | || ||||| | || || Sbjct 417822 ATGCCCTCCTTATCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCACC 417881 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || || | ||| || ||||| ||||||||| Sbjct 417882 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 417929 >seq632 Length=500 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | || | |||||| || |||||| || || ||||| || || Sbjct 250 ACCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 191 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | | || || || ||||| || ||||| || | | ||||| || | ||| Sbjct 190 CAATGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGG 131 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||||||| ||| || || ||||| | | |||||| | ||||| Sbjct 130 AATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAAC 71 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || ||||| ||||| | ||| || ||||| |||||||| Sbjct 70 CTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940815487684