Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq211 165 1e-35
>seq211
Length=153984
Score = 165 bits (182), Expect = 1e-35
Identities = 446/677 (66%), Gaps = 14/677 (2%)
Strand=Plus/Plus
Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079
|| || || || || | |||||||||| | ||| || |||| | || |||||| |||
Sbjct 109195 AGACCCGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTC 109254
Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139
|| ||||||||||| |||||||| || | || || || | || | ||||| ||
Sbjct 109255 ATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTG 109314
Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199
|| ||||| || || | ||| | | | || | |||||| || || | |||
Sbjct 109315 CCGTGGTTCTTGCGGAGGTCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAG 109374
Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259
||||| | | || || || ||||| || ||||| || | || | |||||||| ||
Sbjct 109375 ATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTG 109434
Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319
| || | | ||| || ||| ||| ||||| || |||||||| || | ||| |||
Sbjct 109435 AAGACGCGGAGCATAGGGGTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAG 109494
Query 63320 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377
||| ||||||| || | ||| |||||| || || || |||||||| || || |
Sbjct 109495 CCAGTGGCACGGATGCGGTGGACATT--TAGACCAATGCCGCCGGCCATTTTTGATATCA 109552
Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437
||||| || | || || ||||||||||| ||| || ||| |||||| | |
Sbjct 109553 TGGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGA 109612
Query 63438 GAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496
|||| ||| |||| | ||| | | ||| || || || || || || || ||||||
Sbjct 109613 GAAAGCAGGACGACAGCT-GTGCCTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCG 109671
Query 63497 TGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC---- 63552
|| || || || || || | | ||||| |||||||| | || | |||
Sbjct 109672 TGGGTGAAGCACTTGCTCGACATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCG 109731
Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63612
|| |||| || || || || ||||| | ||||||||| ||||| || | |||||
Sbjct 109732 CCCCAGATG----CCAACGGCAACGCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTT 109787
Query 63613 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63672
| | | || | | |||||| | ||||| || ||||| || || || | |||
Sbjct 109788 GCCATCAAGCTTGAGAAGATAGGATCTCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTT 109847
Query 63673 AAAGTCTCGTTCGTAAA 63689
||||| || |||||||
Sbjct 109848 GAAGTCGCGGTCGTAAA 109864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633619612494400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |