Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq211 165 1e-35 >seq211 Length=153984 Score = 165 bits (182), Expect = 1e-35 Identities = 446/677 (66%), Gaps = 14/677 (2%) Strand=Plus/Plus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | |||||||||| | ||| || |||| | || |||||| ||| Sbjct 109195 AGACCCGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTC 109254 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || ||||||||||| |||||||| || | || || || | || | ||||| || Sbjct 109255 ATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTG 109314 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || || | ||| | | | || | |||||| || || | ||| Sbjct 109315 CCGTGGTTCTTGCGGAGGTCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAG 109374 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | || || || ||||| || ||||| || | || | |||||||| || Sbjct 109375 ATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGACATAGCGGGCGGTGTTGTTG 109434 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || | | ||| || ||| ||| ||||| || |||||||| || | ||| ||| Sbjct 109435 AAGACGCGGAGCATAGGGGTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAG 109494 Query 63320 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 ||| ||||||| || | ||| |||||| || || || |||||||| || || | Sbjct 109495 CCAGTGGCACGGATGCGGTGGACATT--TAGACCAATGCCGCCGGCCATTTTTGATATCA 109552 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 ||||| || | || || ||||||||||| ||| || ||| |||||| | | Sbjct 109553 TGGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGA 109612 Query 63438 GAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63496 |||| ||| |||| | ||| | | ||| || || || || || || || |||||| Sbjct 109613 GAAAGCAGGACGACAGCT-GTGCCTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCG 109671 Query 63497 TGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC---- 63552 || || || || || || | | ||||| |||||||| | || | ||| Sbjct 109672 TGGGTGAAGCACTTGCTCGACATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCG 109731 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTT 63612 || |||| || || || || ||||| | ||||||||| ||||| || | ||||| Sbjct 109732 CCCCAGATG----CCAACGGCAACGCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTT 109787 Query 63613 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63672 | | | || | | |||||| | ||||| || ||||| || || || | ||| Sbjct 109788 GCCATCAAGCTTGAGAAGATAGGATCTCTCCAAGGTCTTAAAGCCGAAGTATTGGTAGTT 109847 Query 63673 AAAGTCTCGTTCGTAAA 63689 ||||| || ||||||| Sbjct 109848 GAAGTCGCGGTCGTAAA 109864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633619612494400