Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq428 105 6e-18
seq1544 104 2e-17
seq442 89.7 4e-13
seq632 87.8 2e-12
>seq428
Length=571
Score = 105 bits (116), Expect = 6e-18
Identities = 166/233 (71%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || || || || || | ||||| ||| ||||||| |||| || |||
Sbjct 566 AATGCAGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAGCAG 507
Query 25058 TGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| ||||| || || ||| | || | ||| ||||||||||| || || || ||
Sbjct 506 CGACACCATCGA--CAATGTCAAGACCAAGATTCAA-GACAAAGAAGGTATCCCTCCGGA 450
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||||| | ||||| || || || || | ||||||| ||||| ||| ||||||
Sbjct 449 TCAGCAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGATTA 390
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|||||| || || ||||| || || ||| | || || ||||| | || ||||
Sbjct 389 CAATATCCAGAAGGAATCTACTCTTCATCTTGTTCTCAGGCTTCGTGGTGGAA 337
>seq1544
Length=892
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||||||||| || || || ||||||| || ||||||| |||| || ||| |||
Sbjct 835 ATGCAAATATTCGTTAAAACCCTGACCGGAAAGACCATCACTCTCGAGGTCGAGAGTTCT 776
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| ||||| ||||| ||||||||
Sbjct 775 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAG 716
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || || ||||| ||||| | || || | ||| ||| | | || |||||
Sbjct 715 CAACGTCTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGTACTCTTGCTGACTACAAC 656
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||||| || || ||| | || ||
Sbjct 655 ATCCAGAAGGAATCAACCCTTCATCTTGTCCT 624
>seq442
Length=625744
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||| || | || || | || |||||||||||
Sbjct 417415 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACGATTACCTTAGAGGTGGAGTCGTCA 417356
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| || || || || || |||||
Sbjct 417355 GACACAATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 417296
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| |||| ||||| || || || | || || | ||||| | ||| |||||
Sbjct 417295 CAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAAC 417236
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || || || || || |||||
Sbjct 417235 ATTCAGAAGGAGTCGACCCTCCACTTGGTGCT 417204
>seq632
Length=500
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/218 (70%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| ||||| || || || ||||| | || || ||| | ||||| | || || ||| |
Sbjct 20 ACTATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACAATCACTCTTGAGGTTGAGCCC 79
Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
||| ||||| || | || |||| || | ||| ||||||||||| ||||| |||
Sbjct 80 AGTGATACTATAGAA--AATGTTAAAGCCAAGATTCAG-GACAAAGAAGGAATTCCCCCT 136
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
||||||||| | | || ||||| || ||||| || ||||||| | || || |||
Sbjct 137 GACCAACAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGAC 196
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || || || || || ||| | || ||
Sbjct 197 TACAACATCCAGAAGGAGTCTACCCTTCATCTTGTCCT 234
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433319740226660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |