Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1201 161 1e-34 >seq1201 Length=295393 Score = 161 bits (178), Expect = 1e-34 Identities = 379/570 (66%), Gaps = 9/570 (2%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| | ||| ||||||||||| || | ||| || || || || || | ||| ||| Sbjct 156489 GTACAGAAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGA 156548 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| |||| ||| || | || || || ||||||||||| || || || || ||| ||| Sbjct 156549 GAAGGTTAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACC 156608 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || || || || ||||| ||||| || || | || | ||| || | ||| Sbjct 156609 GCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGT---GGA 156665 Query 93262 ATTACTGC---TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || || ||||||| || ||||| || || || || || || || | || Sbjct 156666 CTTTGTGTCCGTGATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGT 156725 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 ||||| ||||| || || || |||| | | | || ||||| || ||||| | Sbjct 156726 GTCGATGGCGTTGAAGAGATAGGTACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAG 156785 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 || || || | || || || | |||||||| || ||||| |||||||| || | Sbjct 156786 AAGGGAGTAAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCG 156845 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || | || ||| ||||| ||| || | ||| || || || |||||||| || || Sbjct 156846 CGCCTCGGGGACCTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCC 156905 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 ||||| || || || || || | || || || || | ||||||||||| || | Sbjct 156906 GTCGGAAGCGGCGAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGAT 156965 Query 93559 C---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 | || | ||| ||| ||||| || || | ||| | || || ||||||| || || Sbjct 156966 CTTGTTGTTCCAGTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCAGAAAGA 157025 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || || || || |||||||| | ||| || Sbjct 157026 GGCCTCGGCCTTCTTGTACATTTGCCAAAT 157055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556849913371360