Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1201 161 1e-34
>seq1201
Length=295393
Score = 161 bits (178), Expect = 1e-34
Identities = 379/570 (66%), Gaps = 9/570 (2%)
Strand=Plus/Plus
Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141
||||| | ||| ||||||||||| || | ||| || || || || || | ||| |||
Sbjct 156489 GTACAGAAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGA 156548
Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201
||| |||| ||| || | || || || ||||||||||| || || || || ||| |||
Sbjct 156549 GAAGGTTAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACC 156608
Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261
|| || || || || ||||| ||||| || || | || | ||| || | |||
Sbjct 156609 GCTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGT---GGA 156665
Query 93262 ATTACTGC---TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318
|| || ||||||| || ||||| || || || || || || || | ||
Sbjct 156666 CTTTGTGTCCGTGATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGT 156725
Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378
||||| ||||| || || || |||| | | | || ||||| || ||||| |
Sbjct 156726 GTCGATGGCGTTGAAGAGATAGGTACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAG 156785
Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438
|| || || | || || || | |||||||| || ||||| |||||||| || |
Sbjct 156786 AAGGGAGTAAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCG 156845
Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498
|| || | || ||| ||||| ||| || | ||| || || || |||||||| || ||
Sbjct 156846 CGCCTCGGGGACCTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCC 156905
Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558
||||| || || || || || | || || || || | ||||||||||| || |
Sbjct 156906 GTCGGAAGCGGCGAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGAT 156965
Query 93559 C---TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615
| || | ||| ||| ||||| || || | ||| | || || ||||||| || ||
Sbjct 156966 CTTGTTGTTCCAGTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCAGAAAGA 157025
Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATAT 93645
|| || || || |||||||| | ||| ||
Sbjct 157026 GGCCTCGGCCTTCTTGTACATTTGCCAAAT 157055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556849913371360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |