Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq442 131 1e-25 seq643 118 9e-22 seq428 118 9e-22 seq1544 111 1e-19 seq835 95.1 1e-14 >seq442 Length=625744 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| | || Sbjct 417928 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 417869 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || || || || |||||||| || || ||||| || Sbjct 417868 GATACCATCGACAATGTGAAGTCTAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 417809 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || |||||||| ||| | |||||| ||||||| | || ||||||||| Sbjct 417808 CAACGTCTTATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCTTGTCTGATTACAAC 417749 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| ||| | || || ||| | || | ||||| || Sbjct 417748 ATCCAGAAGGAATCTACCCTTCACTTGGTTCTCCGTCTCCGCGGTGG 417702 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || ||| | || | || ||||| | | Sbjct 417415 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACGATTACCTTAGAGGTGGAGTCGTCA 417356 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| || || ||||| || Sbjct 417355 GACACAATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 417296 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||| | ||||| ||||||| ||||||| |||||| Sbjct 417295 CAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAAC 417236 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||| | || || || | || | || ||||| Sbjct 417235 ATTCAGAAGGAGTCGACCCTCCACTTGGTGCTTCGCCTCCGTGGAGG 417189 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22229 TTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGG 22288 |||| || ||| | || || || || |||| || || ||||| | | ||| || | | Sbjct 417633 TTGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTAGCGACACTATCG 417574 Query 22289 ACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTA 22348 || | |||| || || || || |||||||| ||||| ||||| || || ||||| | Sbjct 417573 ACAACGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCA 417514 Query 22349 TATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAG 22408 | || || ||||| ||| | ||||| || ||| ||||||| ||||||||||| || | Sbjct 417513 TCTTCGCTGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCCGACTACAACATTCAGAAGG 417454 Query 22409 AATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | || ||| | || || || | || | ||||||||| Sbjct 417453 AGTCTACCCTTCACTTGGTCCTTCGCCTTCGCGGAGGT 417416 >seq643 Length=80414 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| ||||| ||||| | || Sbjct 65460 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 65401 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || ||||| || Sbjct 65400 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 65341 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | ||||| ||||||| ||||||| |||||| Sbjct 65340 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 65281 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||| | || | || |||| |||| |||||| Sbjct 65280 ATCCAGAAGGAGAGCACCCTCCACCTCGTCCTGCGCCTGCGTGGAGGT 65233 >seq428 Length=571 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| ||||| || ||||| ||||||| ||||| |||| || || || || | | Sbjct 568 AAAATGCAGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAGC 509 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| ||| | ||| || |||| || ||||||||||| || ||||| || || ||| Sbjct 508 AGCGACACCATCGACAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCTCCGGAT 449 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || || || || || ||| | || ||| |||||| | |||||||| Sbjct 448 CAGCAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGATTAC 389 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || ||||| || | ||| | ||| Sbjct 388 AATATCCAGAAGGAATCTACTCTTCATCTTGTT 356 >seq1544 Length=892 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 ||||||||||| || |||||||| | ||||| || || ||||||| || || || | Sbjct 838 AAGATGCAAATATTCGTTAAAACCCTGACCGGAAAGACCATCACTCTCGAGGTCGAGAGT 779 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| | |||| || || || |||||||| || ||||| || || Sbjct 778 TCTGACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGAC 719 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || |||||||| || || ||||| |||||| | ||||| || || | | || ||| Sbjct 718 CAGCAACGTCTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGTACTCTTGCTGACTAC 659 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||||| ||| | ||| | || | || | || |||||| Sbjct 658 AACATCCAGAAGGAATCAACCCTTCATCTTGTCCTCCGTCTCCGTGGAGGT 608 >seq835 Length=459924 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || | || ||||| || || || |||| || | Sbjct 159331 TTTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGAT 159390 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| || || ||||| || || || | Sbjct 159391 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTT 159450 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||||| ||| | ||||| ||||||| ||||||| |||||||| || || Sbjct 159451 GATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAA 159510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419719999459660