Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq520 96.9 7e-15
seq1068 89.7 1e-12
seq1344 87.8 4e-12
seq1290 87.8 4e-12
seq1234 87.8 4e-12
seq1223 87.8 4e-12
seq1135 87.8 4e-12
seq1112 87.8 4e-12
seq1024 87.8 4e-12
seq879 87.8 4e-12
seq824 87.8 4e-12
seq791 87.8 4e-12
seq746 87.8 4e-12
seq680 87.8 4e-12
seq660 87.8 4e-12
seq1444 86.0 1e-11
seq1312 86.0 1e-11
>seq520
Length=107636
Score = 96.9 bits (106), Expect = 7e-15
Identities = 95/120 (79%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762
||||||||||| || ||||| ||||| |||||| ||||| | ||| | | || ||
Sbjct 54815 CACTCTCGCATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGGTCGTCCTTGCCGCTTGC 54756
Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
||| ||||| | || ||| |||||||||| |||||||||||||||||| ||||||| ||
Sbjct 54755 TCT-TGGCAGCGTCCCCACTTGATCGTTCTTGACGAGCCTACCAACTATTTGGACCGTGA 54697
Score = 96.9 bits (106), Expect = 7e-15
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| || || |||| ||||| ||||| || |||| ||||| ||||| |||
Sbjct 56219 GGTGAGGACCTTTGCAACTGCACCTTCTCTCTCGCCTACGGTGCCAAGATCCTGCTCAAC 56160
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| |||| ||||||||||| | || || ||||| ||||||||| || |
Sbjct 56159 CAGACCCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 56100
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | |||
Sbjct 56099 GGCAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 56041
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
||||| | ||| || | || ||||||||| | |||||
Sbjct 56040 GAGCGAGGTCAAGACCGTCTTCGTTGAGCACGACCTTGACTC 55999
>seq1068
Length=331788
Score = 89.7 bits (98), Expect = 1e-12
Identities = 74/89 (83%), Gaps = 1/89 (1%)
Strand=Plus/Minus
Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559
||| |||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||
Sbjct 243352 GATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTC 243293
Query 142560 GAGCCCCACATCGGGCAGAAGTCGCCGTC 142588
|| |||||| |||||| || || |||||
Sbjct 243292 GACCCCCACGTCGGGCTCAATTC-CCGTC 243265
>seq1344
Length=688743
Score = 87.8 bits (96), Expect = 4e-12
Identities = 73/88 (83%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||
Sbjct 457985 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 458044
Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588
| |||||| |||||| || || |||||
Sbjct 458045 ACCCCCACGTCGGGCTCAATTC-CCGTC 458071
>seq1290
Length=271364
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 60393 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 60452
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 60453 CCCACGTCGGGCTCAATTC-CCGTC 60476
>seq1234
Length=712154
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 433612 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 433553
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 433552 CCCACGTCGGGCTCAATTC-CCGTC 433529
>seq1223
Length=291729
Score = 87.8 bits (96), Expect = 4e-12
Identities = 73/88 (83%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||
Sbjct 212003 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 211944
Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588
| |||||| |||||| || || |||||
Sbjct 211943 ACCCCCACGTCGGGCTCAATTC-CCGTC 211917
>seq1135
Length=307234
Score = 87.8 bits (96), Expect = 4e-12
Identities = 73/88 (83%), Gaps = 1/88 (1%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||
Sbjct 199796 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 199737
Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588
| |||||| |||||| || || |||||
Sbjct 199736 ACCCCCACGTCGGGCTCAATTC-CCGTC 199710
>seq1112
Length=320824
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 99578 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 99519
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 99518 CCCACGTCGGGCTCAATTC-CCGTC 99495
>seq1024
Length=341222
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 226722 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 226781
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 226782 CCCACGTCGGGCTCAATTC-CCGTC 226805
>seq879
Length=431597
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 381593 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 381534
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 381533 CCCACGTCGGGCTCAATTC-CCGTC 381510
>seq824
Length=472261
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 309746 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 309687
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 309686 CCCACGTCGGGCTCAATTC-CCGTC 309663
>seq791
Length=504482
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 337621 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 337562
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 337561 CCCACGTCGGGCTCAATTC-CCGTC 337538
>seq746
Length=525449
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 274509 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 274450
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 274449 CCCACGTCGGGCTCAATTC-CCGTC 274426
>seq680
Length=551530
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 249482 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 249423
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 249422 CCCACGTCGGGCTCAATTC-CCGTC 249399
>seq660
Length=65739
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 44766 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 44825
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 44826 CCCACGTCGGGCTCAATTC-CCGTC 44849
>seq1444
Length=223677
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 86025 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 85966
Query 142564 CCCACATCGGGC 142575
||||| ||||||
Sbjct 85965 CCCACGTCGGGC 85954
>seq1312
Length=266842
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || || || || ||||||||||| |||||| |||| | |||| || || || |
Sbjct 181240 GTCGGCTCGCTCTCTGGTGGTTGGAAAATGAAGTTGGCTTTGGCTCGTGCTATGCTGAAG 181299
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
| ||||||||||| ||||||| || || || |||||| |||| ||||| | |||
Sbjct 181300 GGCGCCGATGTCCTGTTGCTTGACGAACCTACTAACCACTTGGATGTTGCCAACATTGCC 181359
Query 279816 TGGCTAGTGTCCTACCT 279832
||||| | | |||||||
Sbjct 181360 TGGCTCGAGACCTACCT 181376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027816203435324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |