Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq520 96.9 7e-15 seq1068 89.7 1e-12 seq1344 87.8 4e-12 seq1290 87.8 4e-12 seq1234 87.8 4e-12 seq1223 87.8 4e-12 seq1135 87.8 4e-12 seq1112 87.8 4e-12 seq1024 87.8 4e-12 seq879 87.8 4e-12 seq824 87.8 4e-12 seq791 87.8 4e-12 seq746 87.8 4e-12 seq680 87.8 4e-12 seq660 87.8 4e-12 seq1444 86.0 1e-11 seq1312 86.0 1e-11 >seq520 Length=107636 Score = 96.9 bits (106), Expect = 7e-15 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||||||||| || ||||| ||||| |||||| ||||| | ||| | | || || Sbjct 54815 CACTCTCGCATGCGTGGTCTGTCTGGTGGCCAGCGTGTCAAGGTCGTCCTTGCCGCTTGC 54756 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||| ||||| | || ||| |||||||||| |||||||||||||||||| ||||||| || Sbjct 54755 TCT-TGGCAGCGTCCCCACTTGATCGTTCTTGACGAGCCTACCAACTATTTGGACCGTGA 54697 Score = 96.9 bits (106), Expect = 7e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| ||||| || |||| ||||| ||||| ||| Sbjct 56219 GGTGAGGACCTTTGCAACTGCACCTTCTCTCTCGCCTACGGTGCCAAGATCCTGCTCAAC 56160 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| |||| ||||||||||| | || || ||||| ||||||||| || | Sbjct 56159 CAGACCCACCTCCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 56100 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | | ||| ||||| | ||| Sbjct 56099 GGCAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 56041 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 56040 GAGCGAGGTCAAGACCGTCTTCGTTGAGCACGACCTTGACTC 55999 >seq1068 Length=331788 Score = 89.7 bits (98), Expect = 1e-12 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 ||| |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||| Sbjct 243352 GATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTC 243293 Query 142560 GAGCCCCACATCGGGCAGAAGTCGCCGTC 142588 || |||||| |||||| || || ||||| Sbjct 243292 GACCCCCACGTCGGGCTCAATTC-CCGTC 243265 >seq1344 Length=688743 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||| Sbjct 457985 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 458044 Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588 | |||||| |||||| || || ||||| Sbjct 458045 ACCCCCACGTCGGGCTCAATTC-CCGTC 458071 >seq1290 Length=271364 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 60393 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 60452 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 60453 CCCACGTCGGGCTCAATTC-CCGTC 60476 >seq1234 Length=712154 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 433612 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 433553 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 433552 CCCACGTCGGGCTCAATTC-CCGTC 433529 >seq1223 Length=291729 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||| Sbjct 212003 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 211944 Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588 | |||||| |||||| || || ||||| Sbjct 211943 ACCCCCACGTCGGGCTCAATTC-CCGTC 211917 >seq1135 Length=307234 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| ||||||| ||||||||||| ||||||||||||| ||| ||||||||| Sbjct 199796 ATCGCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCG 199737 Query 142561 AGCCCCACATCGGGCAGAAGTCGCCGTC 142588 | |||||| |||||| || || ||||| Sbjct 199736 ACCCCCACGTCGGGCTCAATTC-CCGTC 199710 >seq1112 Length=320824 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 99578 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 99519 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 99518 CCCACGTCGGGCTCAATTC-CCGTC 99495 >seq1024 Length=341222 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 226722 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 226781 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 226782 CCCACGTCGGGCTCAATTC-CCGTC 226805 >seq879 Length=431597 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 381593 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 381534 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 381533 CCCACGTCGGGCTCAATTC-CCGTC 381510 >seq824 Length=472261 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 309746 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 309687 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 309686 CCCACGTCGGGCTCAATTC-CCGTC 309663 >seq791 Length=504482 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 337621 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 337562 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 337561 CCCACGTCGGGCTCAATTC-CCGTC 337538 >seq746 Length=525449 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 274509 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 274450 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 274449 CCCACGTCGGGCTCAATTC-CCGTC 274426 >seq680 Length=551530 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 249482 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 249423 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 249422 CCCACGTCGGGCTCAATTC-CCGTC 249399 >seq660 Length=65739 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 44766 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 44825 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 44826 CCCACGTCGGGCTCAATTC-CCGTC 44849 >seq1444 Length=223677 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 86025 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 85966 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 85965 CCCACGTCGGGC 85954 >seq1312 Length=266842 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || || || ||||||||||| |||||| |||| | |||| || || || | Sbjct 181240 GTCGGCTCGCTCTCTGGTGGTTGGAAAATGAAGTTGGCTTTGGCTCGTGCTATGCTGAAG 181299 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||||||||| ||||||| || || || |||||| |||| ||||| | ||| Sbjct 181300 GGCGCCGATGTCCTGTTGCTTGACGAACCTACTAACCACTTGGATGTTGCCAACATTGCC 181359 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | | ||||||| Sbjct 181360 TGGCTCGAGACCTACCT 181376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027816203435324