Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq428 136 3e-27
seq442 95.1 1e-14
seq632 91.5 1e-13
>seq428
Length=571
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || || | ||| | ||| | |||||||| || || || |||||||||
Sbjct 336 ATTCCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCG 395
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || ||||||||| || ||||||||| | || | |||||| || ||||||
Sbjct 396 GCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGA 455
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||||||||| |||||| || | | || | ||||||| || |||
Sbjct 456 GGGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCG 515
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | ||||| ||||| || ||||| || |||||||||||
Sbjct 516 ACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCAT 565
>seq442
Length=625744
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || ||||||||||| ||| | || || || ||||| || ||||||
Sbjct 417219 GTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCA 417278
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| |||||||| ||||| || || ||||| || ||||| ||||| ||
Sbjct 417279 GCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 417338
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | ||||| | || || || || | ||| | ||| ||||||||||| ||
Sbjct 417339 ACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCTTGCCGGTCAGGGTC 417398
Query 114366 TTTACAAAAATCTGCAT 114382
|| || |||||||||||
Sbjct 417399 TTCACGAAAATCTGCAT 417415
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || || | | || || || | ||||| || || ||||||||||| |||
Sbjct 417414 ATACCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCG 417473
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| |||||| || || || || || |||||| ||||||||||||| ||||| ||
Sbjct 417474 GAGAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGG 417533
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || || || ||||| || | | || | |||||| | || ||
Sbjct 417534 GGAATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCC 417593
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372
|| || | ||| | || ||||| || ||||| || ||||
Sbjct 417594 ACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAA 417633
>seq632
Length=500
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || | | || | ||| | ||||| || || || |||||||| |||
Sbjct 250 ACCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 191
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || | |||||| | ||||||||||| |||| | | ||||||||| || ||
Sbjct 190 CAATGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGG 131
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||||||||| |||||| ||| | | ||| | || || ||| || ||
Sbjct 130 AATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAAC 71
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | |||||||| || || || || || || ||||||||
Sbjct 70 CTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420126391713168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |