Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq428 136 3e-27 seq442 95.1 1e-14 seq632 91.5 1e-13 >seq428 Length=571 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | ||| | ||| | |||||||| || || || ||||||||| Sbjct 336 ATTCCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCG 395 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||||||| || ||||||||| | || | |||||| || |||||| Sbjct 396 GCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGA 455 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| |||||| || | | || | ||||||| || ||| Sbjct 456 GGGATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCG 515 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| ||||| || ||||| || ||||||||||| Sbjct 516 ACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCAT 565 >seq442 Length=625744 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| ||| | || || || ||||| || |||||| Sbjct 417219 GTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCA 417278 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||| || || ||||| || ||||| ||||| || Sbjct 417279 GCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 417338 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | || || || || | ||| | ||| ||||||||||| || Sbjct 417339 ACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCTTGCCGGTCAGGGTC 417398 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 417399 TTCACGAAAATCTGCAT 417415 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || || || | ||||| || || ||||||||||| ||| Sbjct 417414 ATACCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCG 417473 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| || || || || || |||||| ||||||||||||| ||||| || Sbjct 417474 GAGAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGG 417533 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || ||||| || | | || | |||||| | || || Sbjct 417534 GGAATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCC 417593 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 || || | ||| | || ||||| || ||||| || |||| Sbjct 417594 ACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAA 417633 >seq632 Length=500 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || | ||| | ||||| || || || |||||||| ||| Sbjct 250 ACCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 191 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || | |||||| | ||||||||||| |||| | | ||||||||| || || Sbjct 190 CAATGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGG 131 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| |||||| ||| | | ||| | || || ||| || || Sbjct 130 AATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAAC 71 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | |||||||| || || || || || || |||||||| Sbjct 70 CTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420126391713168