Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1201 399 4e-106 seq211 390 2e-103 >seq1201 Length=295393 Score = 399 bits (442), Expect = 4e-106 Identities = 605/849 (71%), Gaps = 24/849 (3%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || ||||||||||| || ||||||| Sbjct 157046 ATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCTGAGGAGATTGATTTGTCCAAGGAT 156987 Query 42369 ACGGCCGGCTGGGAGT-CACTGTCTGAGA--ACGAAAAGTTTTTCCTCAAAAACATACTG 42425 || |||| | || || || | || |||| ||| || |||| || Sbjct 156986 CTCCACGACTGGAACAACAAGATCAACGATGATGAGAAGTACTTCATCTCTCACATTCTC 156927 Query 42426 GCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAA 42485 |||||||||||||| || |||||||| |||||||||||||||| | ||| Sbjct 156926 GCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACCTGGTTGAGCGTTTCTCTGGC 156867 Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 || || ||| | ||||||||||||||||||||||||||||| || |||||| | Sbjct 156866 GAAGTCCAGGTCCCCGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATT 156807 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAAC 42605 ||||| ||| ||| || || || |||| ||||| ||| || | | |||||| | Sbjct 156806 CACTCCGAGACTTACTCCCTTCTCATCGACACCTACATTAAGGAGCCTGCCCAGCGTACC 156747 Query 42606 GGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTC 42665 || ||||| ||||| || || || ||||||||| |||||||| |||||||| | Sbjct 156746 TATCTCTTCAACGCCATCGACACCATCCCCTGCATCCGTAAGAAGGCTGACTGGGCCTTG 156687 Query 42666 AACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 ||||||| | | | | | | | || |||| | || | || || |||||| ||||||| Sbjct 156686 CGCTGGATCACG-GACACAAAGTCCACCTTCGCCCAGCGCCTCGTTGCCTTTGCCGCCGT 156628 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGT 42783 |||||||||||||||| || || |||||||||||||||||||||||| || ||| | Sbjct 156627 CGAGGGCATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCT 156568 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 | |||||||| || |||||||| ||||| |||||| | | || ||||| || || | | Sbjct 156567 C-ATGCCCGGTCTAACCTTCTCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCG 156509 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCC 42903 ||||||||||||| |||| ||| ||||| | |||| ||| ||| || | | Sbjct 156508 ACTTTGCCTGCCTTCTGTACTCT---CACCTGAAGCACCGCCCCAGCAAGCAGGTGATTG 156452 Query 42904 GGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCG 42963 || || ||| || || || |||||||| | |||||||| || || | ||||| Sbjct 156451 AGGATATTATCGTCGATGCTGTCAAGATCGAGCAAGAGTTCCTGACCGAGGCTCTGCCTT 156392 Query 42964 TGTCCCTGGTCGGCATGAACCACGACCTCATGT-GCAAGTACATCCAGTACGTCGCCGAC 43022 |||| | ||||||||| | |||| ||| |||| |||||| ||| |||||| || Sbjct 156391 GCGCCCTCCTGGGCATGAACTCCAACCTGATGAAGCAA-TACATCGAGTTCGTCGCTGAT 156333 Query 43023 CATCTCCTGTGCCAGATGGGTCTCAGC--CGCC----TCTACAACACGCCGTGCCCCTTC 43076 | ||| || | | |||| || || | ||||||| || | ||||||| Sbjct 156332 CGTCTGTTGGTC------GCTCTCGGCAACGACAAGGTCTACAAATCGGCCAACCCCTTC 156279 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 ||||| |||||||||||||| | | |||||||||||||| || |||||||| |||||| Sbjct 156278 GACTTCATGGAGAACATCTCTCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCC 156219 Query 43137 GACTACCAG 43145 ||||||||| Sbjct 156218 GACTACCAG 156210 >seq211 Length=153984 Score = 390 bits (432), Expect = 2e-103 Identities = 1059/1594 (66%), Gaps = 65/1594 (4%) Strand=Plus/Plus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGA-GG 243934 ||||||||||||| |||||||| |||| |||| || || |||||||| | || || Sbjct 108141 GTTGAGGGACTGGGACTGGTCGATAAAGG-CGCCACGGTCGGCGGCCATCTGAACGACGG 108199 Query 243935 TCC-TTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGG--GGAAC 243991 | | || || || || || ||| || ||||| | || ||||| ||||| |||| Sbjct 108200 TACGTTGGGAAATTTCCCAGACG--GTTTTGTACAGGGCCTTGAC---CTCGGCGGGAAT 108254 Query 243992 CCTTCGA-TGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTT 244050 | || |||||||||| ||||| || | | || | || | |||| ||| Sbjct 108255 GTTGGGAATGTTCTGCACGGAGCCATTCTCAGCAATAATGCGGTTCTTCATGGCATCAGA 108314 Query 244051 CCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCT---GTTCACCACCTGAAACTC 244107 ||||| ||||| | | || ||| || || ||| ||| || ||||||||||| Sbjct 108315 CCACAAGCCCATGTCGACGAGGTCCTTGA---GGAGCCAAGGGTTGACAACCTGAAACTC 108371 Query 244108 TCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTT 244167 || | || ||||| |||||||||| |||| | || ||||| | || || |||| Sbjct 108372 ACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTT 108431 Query 244168 GCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCAC 244227 |||||| ||||| | || || || || |||||||| | || |||| ||||| | ||| Sbjct 108432 GCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACGAGCAAGCTGTTACGCAC 108491 Query 244228 GCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTC 244287 || ||| || ||| | |||| | ||||||||| |||||| Sbjct 108492 ACCATGCTGCTTGATCTGTTCCTTGAGAGAATCCCAGTCCCA---------GAGGTCGGA 108542 Query 244288 GCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTA 244347 | | |||| |||||||||||| | || || | |||| ||| ||| ||| || || Sbjct 108543 GGGCTTGACTCCCCACATGTCATATTGAAGGACGCCCTGTGAGACTGGGGAGCCTTCATA 108602 Query 244348 GGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTCGAGGGCGGCGTAGT 244406 | || |||| || || || ||| |||| || | | || ||| || |||| || Sbjct 108603 AGACGAATAGGTGCCCTCCTCCTTGGCTAGCTGCACTGACATGGT-GAGAGCAGCGTGGT 108661 Query 244407 AGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT-GCCGCAGGTGAAGGGGATG 244465 ||||||||||||||||| ||||||||| || || |||| | || | ||| || | Sbjct 108662 AGATGGTCTCGAAGATCTTCTTGTTCAGTTCACGAGCCTCAGGCG-ACTCGAACGGCAGT 108720 Query 244466 CCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGC 244525 | || || ||| | || || || ||||| || |||| ||| ||||| | || ||| Sbjct 108721 CGCAAAGCCAAGAATGCATCAGCAAGACCCTGGACACCGAGGCCAATGGGCCGATGGCGC 108780 Query 244526 TTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAG 244584 ||||| | || | || |||| ||||| || |||| ||||||| | | | || || Sbjct 108781 ATGTTGCTGTTGCGAGCCTCCGGG-ACGGGATAGTGGTTGACGTCGATGATCCTATTCAG 108839 Query 244585 GTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATC 244644 |||||| | | || ||| ||| ||| ||| ||||| || ||| Sbjct 108840 GTTGCGAACAACAACCTGGGTGACATCGTGTAGCTTCTGGAAGTCATA--------GATT 108891 Query 244645 CTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGC 244704 | || || || | || || || ||| || | | |||| |||||||||||| Sbjct 108892 C-CGTCGCTGTAGTTC---ACGAAAGAAGGGAGAGCAAGGGACGCCAAGTTGCAGACGGC 108947 Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 ||||| || | | | ||||| | || || ||||| ||||| || ||||| Sbjct 108948 GACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGCAAAGGTTGGAGCTTCGAATGGT 109007 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTT-GCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||| || | || || ||| |||| ||| ||| | ||||||||||||||||| || Sbjct 109008 GCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG-ATCCTTGTAGAGCATGAAAGGGT 109066 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 |||||||| |||||| |||| | | | |||||| | | ||||| | ||| Sbjct 109067 TGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCAGAGCTTCTGGGCCTTCATGGTCT 109126 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGA 244943 | ||| ||||||| || |||||| ||||| ||| ||||| || ||| || Sbjct 109127 TTCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCTTCGAATTCCTCGCCATAGC 109186 Query 244944 CCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTG 245002 ||| | || || |||||| || ||| ||||| || |||| || ||| | || Sbjct 109187 AGTCGGCAAGACCCGGGCAC-TCGTTGGGACACATCAGTGTCCAGTCACCGTTCTTCTCC 109245 Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || | || ||||||||| || |||||||| ||||| |||| ||||| | || | | Sbjct 109246 ACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACC 109305 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| ||| |||||| | || |||||||| || ||||||||| | ||||||||| Sbjct 109306 TCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAAACTCGAAGACGTCGGCATGCCAGGGC 109365 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCG 245182 || | ||||| || | ||| ||||| ||||||||||| |||||||| | | | || Sbjct 109366 TCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCGA----CATAGCG 109421 Query 245183 AGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCC 245238 ||| |||||||| ||| || |||| | ||||| ||| ||| |||||||| Sbjct 109422 GGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACACCGTTGGAGGTGCCATTGGTGCC 109481 Query 245239 CTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGG 245294 |||||||| ||| || | | || ||| | ||||||| || | ||||||| Sbjct 109482 GGCGATGTAGGAGCCAGTGGCAC---GGATGC-GGTGGACATTTAGACCAATGCCGCCGG 109537 Query 245295 CGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCG 245354 | || || || | ||||||| |||| | ||||| |||||||| || ||| Sbjct 109538 CCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTCAATAGAGTCTT 109597 Query 245355 ACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACA 245414 |||||||| || ||||||||||| |||||||| | || ||| | | | |||||||| Sbjct 109598 CCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGCCTGGGGAGTACCGGCGTTGAACA 109657 Query 245415 GAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 ||||| |||||||| ||| | |||||| Sbjct 109658 ATGTGGGCGAAGCGTGGGTGAAGCACTTGCTCGA 109691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944320738168640