Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq632 140 8e-28 seq1544 132 1e-25 seq643 127 5e-24 seq442 114 3e-20 >seq632 Length=500 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||||| || || || ||||| || ||||||| Sbjct 249 CCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 190 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || ||||| || ||||| || || ||||||| | |||||| | || Sbjct 189 AATGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGA 130 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| ||||| || || ||||| || |||||||||| ||| || | || || Sbjct 129 ATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACC 70 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || || ||||||||||| |||||||| Sbjct 69 TCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23 >seq1544 Length=892 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || ||||||| || ||| || ||||| || ||||| || Sbjct 609 CCTCCACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCA 668 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | |||||||| |||||||||||||| || || | || Sbjct 669 AGAGTACGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGA 728 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || |||||||| || || || ||||| || || | || ||| || Sbjct 729 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTC---TCG 785 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| |||||||| || || |||||||| ||||| Sbjct 786 ACCTCGAGAGTGATGGTCTTTCCGGTCAGGGTTTTAACGAATATTTGCAT 835 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| || | || | ||| || || | || ||||| || || Sbjct 416 TTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCCATCCTCGAGCTGCTTTCCGGCAAA 475 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | ||| ||| ||||||||||| ||||||||||| || || |||||||| Sbjct 476 GATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTAGCCTTCACGTT 535 Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | ||| ||| || || ||||| ||||| || |||||||| || ||||| Sbjct 536 GTCGATGGTATCAGAACTC---TCAACCTCGAGGGTGATGGTTTTCCCGGTGAGCGTCTT 592 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 593 AACAAAGATCTGCAT 607 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || |||||||| || || || || || | ||||||||| | || || || || ||| Sbjct 189 TCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAG 248 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| ||| || || || || ||||||||||| || || || ||||| Sbjct 249 ATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCCTGGATCTTAGCCTTAACGTTG 308 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || |||| || || ||||| || || || || ||||| |||||||| Sbjct 309 TCAATGGTGTCTGAGCTC---TCGACCTCGAGGGTAATAGTTTTACCGGTAAGAGTCTTC 365 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 366 ACAAAGATCTGCAT 379 >seq643 Length=80414 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || ||||| || | ||||| || || ||||| || ||||||| ||| ||||| ||||| Sbjct 65249 AGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 65308 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || ||||| ||||||||||| ||||| || ||||| || || || ||| Sbjct 65309 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 65368 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || | || || || || || | ||| || || || || || ||||| ||| Sbjct 65369 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 65428 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 || || || || ||||||||||| |||||||| || Sbjct 65429 TTACCCGTGAGGGTCTTGACGAAGATCTGCATGAT 65463 >seq442 Length=625744 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | ||| || | |||| || || || || || || ||||||| | Sbjct 417417 CCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 417476 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || |||||||| |||||||| || || ||| Sbjct 417477 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGG---TCGGGG 417533 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||||||||| || | || ||||| || |||| ||||| || || Sbjct 417534 GGAATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCC 417593 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || ||||| ||||| ||||| || || ||||||||||| Sbjct 417594 ACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGAC 417631 Score = 111 bits (122), Expect = 4e-19 Identities = 167/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||| | || || | |||| || ||| || ||||| || || | Sbjct 417698 CATG-CCACCGCGGAGACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAAT 417756 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | ||||| || || || | || || || ||||| || ||||| || || Sbjct 417757 CAGACAAGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGG 417816 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || ||||||||||| || | ||||| || || || | |||| || | Sbjct 417817 GGGGGATGCCCTCCTTATCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACT 417876 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | || ||||| ||||| ||||| || || || ||||||||||| |||||||| ||| Sbjct 417877 CCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATGATG 417932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179630761200392