Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq442 125 8e-24 seq643 113 5e-20 seq428 96.9 4e-15 seq1544 91.5 2e-13 seq835 84.2 2e-11 >seq442 Length=625744 Score = 125 bits (138), Expect = 8e-24 Identities = 139/183 (76%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || | || || || |||| || |||||||| |||||||| Sbjct 417452 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAA 417511 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||||| || | || |||||| ||| ||| || |||| ||| Sbjct 417512 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGA-CGT 417570 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||||| || ||||| |||| |||||||| ||||| || || ||||| | Sbjct 417571 TGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGA 417630 Query 42196 CAA 42198 ||| Sbjct 417631 CAA 417633 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | || |||||| ||||| ||||| || | || || || |||| || Sbjct 417206 CACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 417265 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||||||||| || || || ||||||||||||| || | || |||||||||| Sbjct 417266 AAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 417325 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177 ||| || |||| ||| | | | ||||| ||| ||||| || | || || || | Sbjct 417326 GATCTTGGACTTGA-CGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCT 417384 Query 42178 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || ||||| || || || ||||| Sbjct 417385 TGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 >seq643 Length=80414 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| || | || || || |||| || |||||||| || Sbjct 65264 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 65323 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 ||||| || || ||||||||||||| || | || |||||||||| ||| || ||| Sbjct 65324 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 65383 Query 42132 AGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTC 42191 | | | | |||||| || ||||| || | ||||| || || ||||| || ||| Sbjct 65384 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTC 65443 Query 42192 TTTACAAAGATTTGCAT 42208 || || ||||| ||||| Sbjct 65444 TTGACGAAGATCTGCAT 65460 >seq428 Length=571 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || ||||||||||| |||| || || | || || ||||||||||||||||| Sbjct 375 TCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAA 434 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 || | |||||||| || | || | | || |||| | ||| | || || |||| | Sbjct 435 ATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGT-CTTGAATCTTGGTCTTGACATT 493 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||||| || || |||| ||||||||||| || ||||| || || || Sbjct 494 GTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCAC 553 Query 42197 AAAGATTTGCATTTT 42211 || || |||||||| Sbjct 554 GAAAATCTGCATTTT 568 >seq1544 Length=892 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||||||||| ||||||| |||| || ||||||||||| || || Sbjct 188 CTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAA 247 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | | |||||| || | || | | |||||| ||| || | || | | | ||| Sbjct 248 GATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCC-TGGATCTTAGCCTTAACGT 306 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || |||| || || ||||| || || || |||| Sbjct 307 TGTCAATGGTGTCTGAGCTC---TCGACCTCGAGGGTAATAGTTTTACCGGTAAGAGTCT 363 Query 42193 TTACAAAGATTTGCAT 42208 | |||||||| ||||| Sbjct 364 TCACAAAGATCTGCAT 379 >seq835 Length=459924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | | ||||||||||||| || | || |||||||||| ||| || |||| | Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | ||||||| || || || || | || ||||| || ||||| || ||||| || | Sbjct 159392 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 159333 Query 42199 A 42199 | Sbjct 159332 A 159332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543202180189760