Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq428 123 2e-23 seq442 118 1e-21 seq1544 104 2e-17 seq835 86.0 6e-12 seq632 82.4 8e-11 >seq428 Length=571 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 || || || ||||||| || ||||| || || || |||||||| || | |||||| | Sbjct 351 CTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCA 410 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 |||||||||||||| || || |||| | |||||||| || ||||| || |||||||| Sbjct 411 TCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTG 470 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || || ||| ||| || | || || | | || || || | || | | Sbjct 471 TCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATG 530 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || ||||| | ||||| |||||||| |||||||| Sbjct 531 GTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568 >seq442 Length=625744 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | || | ||||| || || ||||||||||| || | || |||||| |||| Sbjct 417203 AAGCACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTC 417262 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||| || ||| | || || |||||||||||||| || || || || || || Sbjct 417263 CTCAAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 417322 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | ||| || | ||||| |||| || | || Sbjct 417323 CTGGATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGT 417382 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||| || || |||||||| ||||| Sbjct 417383 CTTGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| || || ||||||||||| | | |||||| | || ||||||||| Sbjct 417726 TGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCCTCAAGCTGC 417785 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| |||| || || ||||||||||| || || || || || || || || || Sbjct 417786 TTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTA 417845 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | ||||| | ||||| || | || | ||||||||| || Sbjct 417846 GACTTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTG 417905 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| || ||||| Sbjct 417906 AGGGTCTTGACGAAGATCTGCAT 417928 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || | |||| || || || || ||||||||||| || | Sbjct 417416 ACCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGA 417475 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || |||| || ||||||||||| || | ||||| |||||||||||||| || Sbjct 417476 GAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGG 417535 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| || || | || || | | ||||| Sbjct 417536 AATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCAC 417595 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | || | ||||||||| || | ||| || || Sbjct 417596 CTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGAC 417631 >seq1544 Length=892 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| || || |||||||| || || | || || |||| Sbjct 624 AGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCC 683 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || ||||| | || || || |||||||| || ||||||||||| || || Sbjct 684 TCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCC 743 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || ||| || || || | ||| | |||| Sbjct 744 TGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTC 803 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || ||||||| ||||| ||||| |||||||| || Sbjct 804 TTTCCGGTCAGGGTTTTAACGAATATTTGCATCTT 838 >seq835 Length=459924 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || |||||| |||| ||||||||||||||||| | || Sbjct 159510 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 159451 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 | |||||||||||||| || || || || || || || || || ||| ||| || Sbjct 159450 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 159391 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || || || || || || | || | |||||| || |||| || || |||||| Sbjct 159390 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 159331 >seq632 Length=500 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||||| || || || || || |||||||| || | | || | | || Sbjct 235 AAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATC 176 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | ||| || || ||| | || | | ||| ||||| || |||||||||||||| || Sbjct 175 TTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTC 116 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | || ||||| ||| || | ||||||| || || || || | ||| | | Sbjct 115 CTG-AATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTG 57 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||| || | || || ||||| || ||||| Sbjct 56 TTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499635031944160