Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq211 282 4e-71 >seq211 Length=153984 Score = 282 bits (312), Expect = 4e-71 Identities = 1082/1676 (65%), Gaps = 66/1676 (4%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | ||| || || |||||| || || || |||||| | |||||| Sbjct 109847 AACTACCAATACTTCGGCTTTAAGACCTTGGAGAGATCCTATCTTCTCAAGCTTGATGGC 109788 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || ||||| |||| || || || | |||||||| ||| | || || ||| || Sbjct 109787 AAGATTGCCGAGAGACCACAGCACATGATCATGCGCGTTGCCGTTGGCATCTGGGGCGAC 109728 Query 93835 GACATGCCGAATGTTTTGCGGG-CTTTCAGAGACA--------TGCGGGACAAGAGGTAT 93885 || |||| ||| | | || ||| | | || | |||| | | Sbjct 109727 GA---------TGTTGAGCGCGTCATTGAGACATACAACTTGATGTCGAGCAAGTGCTTC 109677 Query 93886 ACCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGT 93945 ||| || | || || |||||||||| || || || | ||||| |||| || || Sbjct 109676 ACCCACGCTTCGCCCACATTGTTCAACGCCGGTACTCCCCAGGCACAGCTGTCGTCCTGC 109617 Query 93946 TTCCTGAT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTG 94004 || || | ||| | |||| ||||| || || || | ||||| || ||| ||| Sbjct 109616 TTTCTCGTCGAC-ATGAAGGAAGACTCTATTGAGGGCATCTACGACACTCTGAAGACCTG 109558 Query 94005 TGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAG 94064 || | || |||||| || || || || || | | ||||||| | | ||||||| Sbjct 109557 CGCCATGATATCAAAAATGGCCGGCGGCATTGGTCTAAATGTCCACCGCATCCGTGCCAC 109498 Query 94065 GGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGT 94124 || ||||||||| ||| |||||||||||||||||||| | |||||||||||| || Sbjct 109497 TGGCTCCTACATCGCCGGCACCAATGGCACCTCCAACGGTGTTACCCCTATGCTCCGCGT 109438 Query 94125 CTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGC 94184 |||||||||| | || ||||| || ||||||||||| | | | ||| | || || Sbjct 109437 CTTCAACAACACCGCCCGCTATGTCGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTTGC 109378 Query 94185 GGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCA 94244 |||| |||||||||||||| || ||||| | || | ||||| || |||||||| Sbjct 109377 CATCTACCTCGAGCCCTGGCATGCCGACGTCTTCGAGTTTTTGGACCTCCGCAAGAACCA 109318 Query 94245 CGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTT 94304 |||||| || || | ||| | ||||| ||| ||| || ||| | || || || || Sbjct 109317 CGGCAAGGAGGAGGTCCGTGCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTCTT 109258 Query 94305 TATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 ||||| || || ||||| ||| | ||||| || | |||||||| || || || || Sbjct 109257 CATGAAGCGAGTGGAGAAGAACGGTGACTGGACACTGATGTGTCCCAACGAGTGCCCGGG 109198 Query 94365 ACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGG 94423 || ||||| | ||| | || |||| |||||| | |||| | ||| | | Sbjct 109197 TCTTGCCGACTGCTATGGCGAGGAATTCGAAGCCTTGTACGAGAAGTACG-AGCGCGAAG 109139 Query 94424 GCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGG 94483 |||||| | ||| ||| | || |||||| ||| || || | || | ||| Sbjct 109138 GCAAGGGTCGAAAGACCATGAAGGCCCAGAAGCTCTGGTATGCCATTCTCGAGGCCCAGA 109079 Query 94484 TGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGC 94543 ||||| || | || | ||| | | |||||| || |||| |||| ||||||| Sbjct 109078 CTGAGACCGGCAACCCTTTCATGCTCTACAAGGATCATGCCAACCGCAAGAGCAACCAGA 109019 Query 94544 AGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTC 94603 || | ||||| || ||||| || || ||||| || || | ||||| | | | Sbjct 109018 AGAATCTCGGCACCATTCGAAGCTCCAACCTTTGCACGGAAATCATTGAGTACTCGGCCC 108959 Query 94604 CGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATG 94663 | |||||| | || || || ||| ||| ||| | || | |||||||| Sbjct 108958 CTGACGAGGTCGCCGTCTGCAACTTGGCGTCCCTTGCTCTCCCTTCTTTCGTG------A 108905 Query 94664 CCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGG 94723 ||||| | || | || | || | || |||| | || | ||| || Sbjct 108904 ACTACA--GCGACGGAATC-TATGACTTCCAGAAGCTACACGATGTCAC--CCAGGTTGT 108850 Query 94724 TCTT--GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAA 94781 | || |||||||| ||| | |||||| ||| ||| |||||||||||||| || Sbjct 108849 TGTTCGCAACCTGAATAGGATCATCGACGTCAACCACTATCCCGTCCCGGAGGCTCGCAA 108790 Query 94782 CTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGT 94841 | ||| || ||||||||||| ||| |||| ||||||||| | || || || | | Sbjct 108789 CAGCAACATGCGCCATCGGCCCATTGGCCTCGGTGTCCAGGGTCTTGCTGATGCATTCTT 108730 Query 94842 GATGATGCGTCTGCCCTACGACTCTGTCGAC-GCGGCGGGT---TTGAATTTGAACATAT 94897 | |||| ||||| | ||| |||| | | ||| || |||| ||| || | Sbjct 108729 GGCTTTGCGACTGCCGTTCGA----GTCGCCTGAGGCTCGTGAACTGAACAAGAAGATCT 108674 Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCG 94957 |||| | ||| || ||| || | | || || || | |||| ||| || | Sbjct 108673 TCGAGACCATCTACCACGCTGCTCTCACCATGTCAGTGCAGCTAGCCA---AGGA-GGAG 108618 Query 94958 GGCCACACGAATCG--TTCCG-CGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACC 95014 || ||| | | ||| || | || || || | ||||||| | |||| | ||| Sbjct 108617 GG-CAC-CTATTCGTCTTATGAAGGCTCCCCAGTCTCACAGGGCGTCCTTCAATATGACA 108560 Query 95015 TCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTAT 95072 | ||||| || |||||||| | || | |||||||| |||| | | | || | | Sbjct 108559 TGTGGGGAGTCAAGCCCTCCGACCTCTGGGACTGGGATTCTCTCAAGGAACAGA--TCAA 108502 Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 | || |||||| ||| |||| || ||||||||||| || ||| || | || Sbjct 108501 GCAGCATGGTGTGCGTAACAGCTTGCTCGTCGCCCCCATGCCAACCGCCAGTACTTCCCA 108442 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 ||| || ||||||||||| | || || || | |||||||||| | ||| | | || || Sbjct 108441 GATTCTGGGCAACAACGAATGCTTTGAGCCTTACACCTCCAACATCTACCAGCGTCGCGT 108382 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGG 95251 | || || || || | || ||||| ||||| |||||| | || | ||| Sbjct 108381 CTTGGCTGGTGAGTTTCAGGTTGTCAACCCTTGGCTCCTCAAGGACCTCGTCGAC-ATGG 108323 Query 95252 GTGTGTGGGGTGACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAG 95307 | ||||| ||| | ||||||| | |||| | || |||||||| ||| Sbjct 108322 GCTTGTGGTCTGATGCCATGAAGAACCGCATTATTGCT----GAGAATGGCTCCGTGCAG 108267 Query 95308 AACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGAT 95363 ||||| || | || || | || ||||||| || ||||| ||||| ||||| || Sbjct 108266 AACATTCCCAACATTCCCGCCGAGGTCAAGGCCCTGTACAAAACCGTCTGGGAAAT 108211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494713528161440