Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1201 109 5e-19
seq442 107 2e-18
seq1544 95.1 1e-14
seq643 95.1 1e-14
seq428 91.5 1e-13
seq632 84.2 2e-11
>seq1201
Length=295393
Score = 109 bits (120), Expect = 5e-19
Identities = 343/520 (66%), Gaps = 25/520 (5%)
Strand=Plus/Minus
Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-CCAC 52387
|| ||| | || || |||||| | ||||| || |||||| | | ||| | ||||
Sbjct 156719 CCCTGCATCCGTAAGAAGGCTGACTGGGCCTTGCGCTGGATCACGGAC-ACAAAGTCCAC 156661
Query 52388 GCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTT 52447
| ||| ||||| | || ||||| ||| ||||||||| | || || ||| ||||
Sbjct 156660 CTTCGCCCAGCGCCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGT-GCTT 156602
Query 52448 T-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506
| ||| ||||||| | | || | | || | |||||||| || || ||| |||||
Sbjct 156601 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTAACCTTCTCCAACG 156542
Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACT---ACA 52560
|| | || || || || || || || ||||| |||||||| ||||| |||| ||
Sbjct 156541 AGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTTCTGTACTCTCACC 156482
Query 52561 AGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG--GAGGC 52618
|| || | | || | || | | ||| |||| || || | || ||
Sbjct 156481 TGAAGCACC-GCCCCAGCAAGCAGGT--------GAT--TGAGGATATTATCGTCGATGC 156433
Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678
|| ||||| | ||||| | || | || ||||| || || |||||||||||
Sbjct 156432 TGTCAAGATCGAGCAAGAGTTCCTGACCGAGGCTCTGCCTTGCGCCCTCCTGGGCATGAA 156373
Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738
| | | ||| | ||||||||||| || || |||||||||||||| |||||
Sbjct 156372 CTCCAACCTGATGAAGCAATACATCGAGTTCGTCGCTGATCGTCTGTTGGTCGCTCTCGG 156313
Query 52739 GCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797
| | ||| || || ||| | ||| || || || || ||| | ||||| || ||||
Sbjct 156312 CAACGACAAGGT-CTACAAATCGGCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTG 156254
Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||||||||||||| || |||||||| |||| ||| ||
Sbjct 156253 GTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGACTA 156214
>seq442
Length=625744
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| | || || |||||| || || ||||| | |
Sbjct 417222 GACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCA 417281
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| ||||| || || || || || ||||| ||| || || |
Sbjct 417282 AAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 417341
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||| | |||||||||||| | || | ||| || || ||||| || ||
Sbjct 417342 TTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTC 417401
Query 138601 ACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 417402 ACGAAAATCTGCAT 417415
Score = 93.3 bits (102), Expect = 4e-14
Identities = 131/184 (71%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| | ||||| ||||||||| || || || |
Sbjct 417450 GACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCG 417509
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| ||||| || || || || || || || ||| || || |
Sbjct 417510 AAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACG 417569
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | ||||||||||||| || | || || ||||| ||||| ||
Sbjct 417570 TTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTG 417629
Query 138601 ACAA 138604
||||
Sbjct 417630 ACAA 417633
>seq1544
Length=892
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || | ||| | | |||| ||||| || |||||||||||
Sbjct 609 CCTCCACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCA 668
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| ||||||||| ||||| |||| |||| ||||| || ||||| || ||
Sbjct 669 AGAGTACGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGA 728
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| ||||| ||||| ||| || || | | || | |||||| | ||| |||
Sbjct 729 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACC 788
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | || || || ||||| ||||| || || || |||||
Sbjct 789 TCGAGAGTGATGGTCTTTCCGGTCAGGGTTTTAACGAATATTTGCAT 835
>seq643
Length=80414
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/194 (72%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||| | || || ||||||||| || || |||| |
Sbjct 65269 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 65328
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541
||| || ||||| ||||| || || || || || ||||| ||| || || | |||
Sbjct 65329 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 65388
Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601
| || | |||||||| ||||||||||| | || | || ||||| || || || || |
Sbjct 65389 G-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGA 65447
Query 138602 CAAAAATCTGCATG 138615
| || |||||||||
Sbjct 65448 CGAAGATCTGCATG 65461
>seq428
Length=571
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| ||||| || || ||||| ||| || || || || || || || ||||| |
Sbjct 372 GATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCG 431
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538
| || | |||||| || |||||||| |||||||||||||| ||| | || || ||
Sbjct 432 AAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTC-TTGAATCTTGGTCTTGAC 490
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| || | ||||||| | ||| ||||||| || | ||||| || || || ||||
Sbjct 491 ATTG-TCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTT 549
Query 138599 TTACAAAAATCTGCAT 138614
| || |||||||||||
Sbjct 550 TCACGAAAATCTGCAT 565
>seq632
Length=500
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || | ||| | | | |||||||| || |||||||||||| |
Sbjct 249 CCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 190
Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || | || | || || | |||||||| | | |||| | | ||||||||| || ||
Sbjct 189 AATGTTCTGCCA-TCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGG 131
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||||||||| ||| | || | ||||| | ||| | || || | | ||| |
Sbjct 130 AATTCCTTCTTTGTC-CTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAA 72
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | ||||| || || || || || || || ||||||||
Sbjct 71 CCTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496252698070080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |