Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1201 109 5e-19 seq442 107 2e-18 seq1544 95.1 1e-14 seq643 95.1 1e-14 seq428 91.5 1e-13 seq632 84.2 2e-11 >seq1201 Length=295393 Score = 109 bits (120), Expect = 5e-19 Identities = 343/520 (66%), Gaps = 25/520 (5%) Strand=Plus/Minus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-CCAC 52387 || ||| | || || |||||| | ||||| || |||||| | | ||| | |||| Sbjct 156719 CCCTGCATCCGTAAGAAGGCTGACTGGGCCTTGCGCTGGATCACGGAC-ACAAAGTCCAC 156661 Query 52388 GCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTT 52447 | ||| ||||| | || ||||| ||| ||||||||| | || || ||| |||| Sbjct 156660 CTTCGCCCAGCGCCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGT-GCTT 156602 Query 52448 T-GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACG 52506 | ||| ||||||| | | || | | || | |||||||| || || ||| ||||| Sbjct 156601 TCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTAACCTTCTCCAACG 156542 Query 52507 AGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACT---ACA 52560 || | || || || || || || || ||||| |||||||| ||||| |||| || Sbjct 156541 AGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTTCTGTACTCTCACC 156482 Query 52561 AGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAG--GAGGC 52618 || || | | || | || | | ||| |||| || || | || || Sbjct 156481 TGAAGCACC-GCCCCAGCAAGCAGGT--------GAT--TGAGGATATTATCGTCGATGC 156433 Query 52619 GGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAA 52678 || ||||| | ||||| | || | || ||||| || || ||||||||||| Sbjct 156432 TGTCAAGATCGAGCAAGAGTTCCTGACCGAGGCTCTGCCTTGCGCCCTCCTGGGCATGAA 156373 Query 52679 CGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG 52738 | | | ||| | ||||||||||| || || |||||||||||||| ||||| Sbjct 156372 CTCCAACCTGATGAAGCAATACATCGAGTTCGTCGCTGATCGTCTGTTGGTCGCTCTCGG 156313 Query 52739 GCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTG 52797 | | ||| || || ||| | ||| || || || || ||| | ||||| || |||| Sbjct 156312 CAACGACAAGGT-CTACAAATCGGCCAACCCCTTCGACTTCATGGAGAACATCTCTCTTG 156254 Query 52798 AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||| || |||||||| |||| ||| || Sbjct 156253 GTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGCCGACTA 156214 >seq442 Length=625744 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | || || |||||| || || ||||| | | Sbjct 417222 GACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCA 417281 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || || ||||| ||| || || | Sbjct 417282 AAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 417341 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | |||||||||||| | || | ||| || || ||||| || || Sbjct 417342 TTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTC 417401 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 417402 ACGAAAATCTGCAT 417415 Score = 93.3 bits (102), Expect = 4e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | ||||| ||||||||| || || || | Sbjct 417450 GACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCG 417509 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || || || || ||| || || | Sbjct 417510 AAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGACG 417569 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||||| || | || || ||||| ||||| || Sbjct 417570 TTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTG 417629 Query 138601 ACAA 138604 |||| Sbjct 417630 ACAA 417633 >seq1544 Length=892 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | |||| ||||| || ||||||||||| Sbjct 609 CCTCCACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCA 668 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||| ||||| |||| |||| ||||| || ||||| || || Sbjct 669 AGAGTACGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGA 728 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||| | ||| ||| Sbjct 729 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGACC 788 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || ||||| ||||| || || || ||||| Sbjct 789 TCGAGAGTGATGGTCTTTCCGGTCAGGGTTTTAACGAATATTTGCAT 835 >seq643 Length=80414 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | || || ||||||||| || || |||| | Sbjct 65269 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 65328 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| || ||||| ||||| || || || || || ||||| ||| || || | ||| Sbjct 65329 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 65388 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | |||||||| ||||||||||| | || | || ||||| || || || || | Sbjct 65389 G-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGA 65447 Query 138602 CAAAAATCTGCATG 138615 | || ||||||||| Sbjct 65448 CGAAGATCTGCATG 65461 >seq428 Length=571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || || ||||| ||| || || || || || || || ||||| | Sbjct 372 GATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCAGCG 431 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 | || | |||||| || |||||||| |||||||||||||| ||| | || || || Sbjct 432 AAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTC-TTGAATCTTGGTCTTGAC 490 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||||| | ||| ||||||| || | ||||| || || || |||| Sbjct 491 ATTG-TCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTTT 549 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 550 TCACGAAAATCTGCAT 565 >seq632 Length=500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | |||||||| || |||||||||||| | Sbjct 249 CCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 190 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || || | |||||||| | | |||| | | ||||||||| || || Sbjct 189 AATGTTCTGCCA-TCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGG 131 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | || | ||||| | ||| | || || | | ||| | Sbjct 130 AATTCCTTCTTTGTC-CTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAA 72 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| || || || || || || || |||||||| Sbjct 71 CCTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252698070080