Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq632 120 2e-22 seq428 104 2e-17 seq442 93.3 3e-14 >seq632 Length=500 Score = 120 bits (132), Expect = 2e-22 Identities = 152/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAAT--TCTCGCGTCTTCTAAT 15030 |||||||||||| || || || |||||||| ||| || ||| ||| | ||||| || Sbjct 226 ATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCG--GACAATGTTCTGCCATCTTCCAAC 169 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||| ||||| | ||||| | ||||||||| ||||||||||| ||||| ||| Sbjct 168 TGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGAATC 109 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| ||| ||| ||||||||||||| || || || || | || || ||||| || Sbjct 108 TTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTTGCCC 49 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || || |||||| Sbjct 48 GTGAGGGTCTTGACGAAGATCTGCATA 22 >seq428 Length=571 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || | ||| | |||||| ||||| || || || || ||||||||| Sbjct 339 CCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCC 398 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||| | || || |||||| | ||||||||||| || || || Sbjct 399 AAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGG 458 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||| ||| | || ||| | || || || ||||| | || || Sbjct 459 ATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACC 518 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| |||||||| || || || ||||| || ||||| ||||| || Sbjct 519 TCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568 >seq442 Length=625744 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||||||||| || || || |||||||| ||| ||| | | |||| || Sbjct 417435 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCG 417494 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | || | |||||| |||||| ||||| || ||||| || Sbjct 417495 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGG 417554 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || ||||| |||||| || || || | ||| ||||| || Sbjct 417555 ATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTG 417614 Query 15148 CCTGTCAGAGTTTTTACAA 15166 || || ||||| || |||| Sbjct 417615 CCAGTGAGAGTCTTGACAA 417633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357385187661740