Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq632 120 2e-22
seq428 104 2e-17
seq442 93.3 3e-14
>seq632
Length=500
Score = 120 bits (132), Expect = 2e-22
Identities = 152/207 (73%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAAT--TCTCGCGTCTTCTAAT 15030
|||||||||||| || || || |||||||| ||| || ||| ||| | ||||| ||
Sbjct 226 ATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCG--GACAATGTTCTGCCATCTTCCAAC 169
Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090
||||| ||||| | ||||| | ||||||||| ||||||||||| ||||| |||
Sbjct 168 TGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGAATC 109
Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150
||| ||| ||| ||||||||||||| || || || || | || || ||||| ||
Sbjct 108 TTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTTGCCC 49
Query 15151 GTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || || || || || || ||||||
Sbjct 48 GTGAGGGTCTTGACGAAGATCTGCATA 22
>seq428
Length=571
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | || | ||| | |||||| ||||| || || || || |||||||||
Sbjct 339 CCACCACGAAGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCC 398
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | ||||| | || || |||||| | ||||||||||| || || ||
Sbjct 399 AAGGTGCGTCCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGG 458
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| ||||| ||||| ||| ||| | || ||| | || || || ||||| | || ||
Sbjct 459 ATACCTTCTTTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACC 518
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | ||| |||||||| || || || ||||| || ||||| ||||| ||
Sbjct 519 TCGAGGGTGATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTTT 568
>seq442
Length=625744
Score = 93.3 bits (102), Expect = 3e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || ||||||||||| || || || |||||||| ||| ||| | | |||| ||
Sbjct 417435 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCG 417494
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || ||||||||| | || | |||||| |||||| ||||| || ||||| ||
Sbjct 417495 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGG 417554
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| || || | || ||||| |||||| || || || | ||| ||||| ||
Sbjct 417555 ATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTG 417614
Query 15148 CCTGTCAGAGTTTTTACAA 15166
|| || ||||| || ||||
Sbjct 417615 CCAGTGAGAGTCTTGACAA 417633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357385187661740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |