Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq428 140 3e-28 seq442 122 8e-23 seq211 122 8e-23 seq1544 116 4e-21 seq643 100 3e-16 seq835 86.0 6e-12 >seq428 Length=571 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || |||||||||||| ||| ||||| ||| || ||||| || ||| Sbjct 369 GTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCA 428 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| ||||||||||| ||||| || || || ||||| || || |||| Sbjct 429 GCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGTCTTG 488 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||||| |||| ||| | ||||| ||||| || ||| Sbjct 489 ACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTT 548 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 549 TTCACGAAAATCTGCAT 565 >seq442 Length=625744 Score = 122 bits (134), Expect = 8e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || ||||| ||||| ||| | ||||| || || Sbjct 417206 CACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 417265 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || ||||| |||| | |||||||| ||||| || ||||||||||||||| Sbjct 417266 AAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 417325 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||||| |||| |||| ||||| | ||| || || | ||| | ||| | Sbjct 417326 GATCTTGGACTTGACGTTG-TCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCT 417384 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||||| || || || ||||||||||| Sbjct 417385 TGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| || | |||||||| || ||||| ||||| ||| Sbjct 417417 CCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 417476 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || ||||| || |||||| |||| | |||||||| ||||| || Sbjct 417477 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGA 417536 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| ||| || ||||| |||| |||| ||||| || ||| || Sbjct 417537 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCGCTAGACTCCAC 417595 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 |||| ||| | || ||||| || ||||| || |||| Sbjct 417596 CTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAA 417633 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||||| || || || || |||||||| | Sbjct 417702 CCACCGCGGAGACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGAC 417761 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| | || | || ||||| ||||| || Sbjct 417762 AAGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGG 417821 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||| || ||| | | |||| ||| || | | ||| || Sbjct 417822 ATGCCCTCCTTATCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCACC 417881 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || ||||| || || || || || || ||||||||| Sbjct 417882 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 417929 >seq211 Length=153984 Score = 122 bits (134), Expect = 8e-23 Identities = 345/515 (67%), Gaps = 20/515 (4%) Strand=Plus/Plus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||||||||| ||||| | | ||| || | || |||||||| |||||||||||||| Sbjct 108009 GTCGACGGTAAACTGAATGGGGGCAGCAGCAGCTTGCGTGCGCAGGTAGTACATGCCGGT 108068 Query 145779 CTTGAGCTGTTTCTGCCA-CGTGTAAAAGTGTATGCTCGACATGACCGAGTACGTGGGTT 145837 ||| ||| | || ||| | || ||| || ||||| | ||| | | | ||| | Sbjct 108069 CTTCAGCCCTAGCTTCCAGCCTGCGAAA-TGCATGCTAG---TGATCTTGCCCATGG--T 108122 Query 145838 CGGCGACAAACA----AATTTAGAG--ATTGGCTCTGATCAATGAAAGGAGCC-CGGTCG 145890 ||| | | || ||| | ||| | ||| ||| || || ||||| ||| |||||| Sbjct 108123 CGG-GTCTTTCATGTGAATGTTGAGGGACTGGGACTGGTCGAT-AAAGGCGCCACGGTCG 108180 Query 145891 GCGGCCATGTCTATCATGC-ACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTT 145949 |||||||| | | | | || ||| ||||||||| ||||||| | || |||| Sbjct 108181 GCGGCCATCTGAACGACGGTACGTTGGGA-AATTTCCCAGACGGTTTTGTACAGGGCCTT 108239 Query 145950 GACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTT 146009 ||| | ||| || | | |||||||||||| || ||||| || || | || ||| Sbjct 108240 GACCTCGGCGGGAATGTTGGGAATGTTCTGCACGGAGCCATTCTCAGCAATAATGCGGTT 108299 Query 146010 GCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGAC 146069 || | || | | | || ||| |||||| |||||| ||| | ||||||| Sbjct 108300 CTTCATGGCATCAGACCACAAGCCCATGTCGACGAGGTCCTTGAGGAGCCAAGGGTTGAC 108359 Query 146070 CACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAA 146129 ||||||||||| || || | ||||| | | | || | |||| |||| | ||||| || Sbjct 108360 AACCTGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGCTCAAA 108419 Query 146130 CGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAA 146189 | |||||||| || || ||||| | || | ||||| |||||| || || ||||| Sbjct 108420 GCATTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACGAGCAA 108479 Query 146190 AGAGTTTCTCACGCCGTG-TCTTTGAATCTTTTCC 146223 ||| | ||| || || | ||| |||| |||| Sbjct 108480 GCTGTTACGCACACCATGCTGCTTG-ATCTGTTCC 108513 >seq1544 Length=892 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | || | || ||||| || || ||||||||||| | | || | Sbjct 165 CGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCG 224 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || ||||||| | ||||||||| ||||| || |||||||| Sbjct 225 TCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTA 284 Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| ||| || ||| | |||| || | |||||| | |||||||| |||| ||| | Sbjct 285 TCCTGGATCTTAGCCTTAACGTTG-TCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAAT 343 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| ||||| ||||| || ||||| |||||||| Sbjct 344 AGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| || | | || ||| || || ||||||||||| Sbjct 639 GTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCGAGCTGTTTTCCG 698 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| || ||||| || || || || || ||||||||| ||| || |||| Sbjct 699 GCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTG 758 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | ||||||||| |||| || | || || |||||||| || Sbjct 759 ACGTTG-TCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCGGTCAGGGT 817 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || || || ||||| Sbjct 818 TTTAACGAATATTTGCAT 835 >seq643 Length=80414 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | ||||| || || ||||| ||||| ||| | Sbjct 65269 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 65328 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||| |||||||| ||||| || ||||||||||||||| ||| || ||||| | Sbjct 65329 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 65388 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||| | | ||| || || | ||| | || || || || || || || || Sbjct 65389 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGAC 65448 Query 127102 AAAAATCTGCATG 127114 || ||||||||| Sbjct 65449 GAAGATCTGCATG 65461 >seq835 Length=459924 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| ||| | ||||| || || ||||| || || ||| ||||| Sbjct 159510 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 159451 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 || |||||||| ||||| || ||||||||||||||| ||| || ||||| | ||| Sbjct 159450 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 159391 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||| | |||||| || | ||| | || || || ||||| || || || ||| Sbjct 159390 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 159331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475491503959360