Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq428 140 3e-28
seq442 122 8e-23
seq211 122 8e-23
seq1544 116 4e-21
seq643 100 3e-16
seq835 86.0 6e-12
>seq428
Length=571
Score = 140 bits (154), Expect = 3e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||| || || || |||||||||||| ||| ||||| ||| || ||||| || |||
Sbjct 369 GTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCAAGCTGCTTACCA 428
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | ||||| ||||||||||| ||||| || || || ||||| || || ||||
Sbjct 429 GCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGTCTTG 488
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| |||||| | |||||||| |||| ||| | ||||| ||||| || |||
Sbjct 489 ACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTCCCGGTTAGGGTT 548
Query 127097 TTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 549 TTCACGAAAATCTGCAT 565
>seq442
Length=625744
Score = 122 bits (134), Expect = 8e-23
Identities = 155/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963
|||||| || | || ||||| || ||||| ||||| ||| | ||||| || ||
Sbjct 417206 CACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 417265
Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023
||||| || ||||| |||| | |||||||| ||||| || |||||||||||||||
Sbjct 417266 AAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTG 417325
Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082
||| || ||||| |||| |||| ||||| | ||| || || | ||| | ||| |
Sbjct 417326 GATCTTGGACTTGACGTTG-TCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCT 417384
Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||||||| || || || |||||||||||
Sbjct 417385 TGCCGGTCAGGGTCTTCACGAAAATCTGCAT 417415
Score = 111 bits (122), Expect = 1e-19
Identities = 157/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | || | ||||| || | |||||||| || ||||| ||||| |||
Sbjct 417417 CCTCCGCGAAGGCGAAGGACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAG 417476
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| || || ||||| || |||||| |||| | |||||||| ||||| ||
Sbjct 417477 AGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGA 417536
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||| ||| ||| || ||||| |||| |||| ||||| || ||| ||
Sbjct 417537 ATGCCCTCCTTATCCTGGATCTTGGACTTGACGTTG-TCGATAGTGTCGCTAGACTCCAC 417595
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103
|||| ||| | || ||||| || ||||| || ||||
Sbjct 417596 CTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAA 417633
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | ||||| || || || || |||||||| |
Sbjct 417702 CCACCGCGGAGACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGAC 417761
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| || || ||| | || | || ||||| ||||| ||
Sbjct 417762 AAGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGG 417821
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||| ||| ||| || ||| | | |||| ||| || | | ||| ||
Sbjct 417822 ATGCCCTCCTTATCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCACC 417881
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|||| ||| | || ||||| || || || || || || |||||||||
Sbjct 417882 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 417929
>seq211
Length=153984
Score = 122 bits (134), Expect = 8e-23
Identities = 345/515 (67%), Gaps = 20/515 (4%)
Strand=Plus/Plus
Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778
||||||||| ||||| | | ||| || | || |||||||| ||||||||||||||
Sbjct 108009 GTCGACGGTAAACTGAATGGGGGCAGCAGCAGCTTGCGTGCGCAGGTAGTACATGCCGGT 108068
Query 145779 CTTGAGCTGTTTCTGCCA-CGTGTAAAAGTGTATGCTCGACATGACCGAGTACGTGGGTT 145837
||| ||| | || ||| | || ||| || ||||| | ||| | | | ||| |
Sbjct 108069 CTTCAGCCCTAGCTTCCAGCCTGCGAAA-TGCATGCTAG---TGATCTTGCCCATGG--T 108122
Query 145838 CGGCGACAAACA----AATTTAGAG--ATTGGCTCTGATCAATGAAAGGAGCC-CGGTCG 145890
||| | | || ||| | ||| | ||| ||| || || ||||| ||| ||||||
Sbjct 108123 CGG-GTCTTTCATGTGAATGTTGAGGGACTGGGACTGGTCGAT-AAAGGCGCCACGGTCG 108180
Query 145891 GCGGCCATGTCTATCATGC-ACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTT 145949
|||||||| | | | | || ||| ||||||||| ||||||| | || ||||
Sbjct 108181 GCGGCCATCTGAACGACGGTACGTTGGGA-AATTTCCCAGACGGTTTTGTACAGGGCCTT 108239
Query 145950 GACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTT 146009
||| | ||| || | | |||||||||||| || ||||| || || | || |||
Sbjct 108240 GACCTCGGCGGGAATGTTGGGAATGTTCTGCACGGAGCCATTCTCAGCAATAATGCGGTT 108299
Query 146010 GCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGAC 146069
|| | || | | | || ||| |||||| |||||| ||| | |||||||
Sbjct 108300 CTTCATGGCATCAGACCACAAGCCCATGTCGACGAGGTCCTTGAGGAGCCAAGGGTTGAC 108359
Query 146070 CACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAA 146129
||||||||||| || || | ||||| | | | || | |||| |||| | ||||| ||
Sbjct 108360 AACCTGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGCTCAAA 108419
Query 146130 CGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAA 146189
| |||||||| || || ||||| | || | ||||| |||||| || || |||||
Sbjct 108420 GCATTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACGAGCAA 108479
Query 146190 AGAGTTTCTCACGCCGTG-TCTTTGAATCTTTTCC 146223
||| | ||| || || | ||| |||| ||||
Sbjct 108480 GCTGTTACGCACACCATGCTGCTTG-ATCTGTTCC 108513
>seq1544
Length=892
Score = 116 bits (128), Expect = 4e-21
Identities = 157/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958
|||| ||| | || | || ||||| || || ||||||||||| | | || |
Sbjct 165 CGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCG 224
Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018
|| || ||||| || || || ||||||| | ||||||||| ||||| || ||||||||
Sbjct 225 TCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTA 284
Query 127019 TCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
||| ||| || ||| | |||| || | |||||| | |||||||| |||| ||| |
Sbjct 285 TCCTGGATCTTAGCCTTAACGTTG-TCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAAT 343
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||||| ||||| ||||| || ||||| ||||||||
Sbjct 344 AGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || || || || ||||| || | | || ||| || || |||||||||||
Sbjct 639 GTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCGAGCTGTTTTCCG 698
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||||| || ||||| || || || || || ||||||||| ||| || ||||
Sbjct 699 GCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTG 758
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| |||||| | ||||||||| |||| || | || || |||||||| ||
Sbjct 759 ACGTTG-TCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCGGTCAGGGT 817
Query 127096 TTTTACAAAAATCTGCAT 127113
||| || || || |||||
Sbjct 818 TTTAACGAATATTTGCAT 835
>seq643
Length=80414
Score = 100 bits (110), Expect = 3e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| || || || ||||| ||| | ||||| || || ||||| ||||| ||| |
Sbjct 65269 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 65328
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041
||||| |||||||| ||||| || ||||||||||||||| ||| || ||||| |
Sbjct 65329 GATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 65388
Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|||| |||||| | | ||| || || | ||| | || || || || || || || ||
Sbjct 65389 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTGAC 65448
Query 127102 AAAAATCTGCATG 127114
|| |||||||||
Sbjct 65449 GAAGATCTGCATG 65461
>seq835
Length=459924
Score = 86.0 bits (94), Expect = 6e-12
Identities = 127/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| || || ||||| ||| | ||||| || || ||||| || || ||| |||||
Sbjct 159510 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATC 159451
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| |||||||| ||||| || ||||||||||||||| ||| || ||||| | |||
Sbjct 159450 AAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 159391
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| ||||| | |||||| || | ||| | || || || ||||| || || || |||
Sbjct 159390 ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGAAA 159331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475491503959360
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