Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1544 114 1e-20 >seq1544 Length=892 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || ||||| || ||||||||||| ||||| || || || Sbjct 606 ATACCTCCACGGAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCA 665 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | |||||||| ||| | |||| ||||||||||| || Sbjct 666 GCAAGAGTACGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGG 725 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || || |||| || | || | |||||| ||| ||| Sbjct 726 GGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCGATGGTGTCAGAACTCTC 784 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| |||||||| | || || ||||| || ||||| || || ||||||||| Sbjct 785 GACCTCGAGAGTGATGGTCTTTCCGGTCAGGGTTTTAACGAATATTTGCATC 836 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| || || || ||||||||||| ||||| || || || Sbjct 378 ATACCACCACGAAGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCA 437 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || ||||| || | ||||| | ||||| ||||| Sbjct 438 GCCAAAGTCCTTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGA 497 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| ||||| || || || || | || | || | ||| || ||| ||| Sbjct 498 GGGATTCCTTCCTTATCCTGGATCTTAGCCTTCA-CGTTGTCGATGGTATCAGAACTCTC 556 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||||| ||||| || || || ||||| || ||||| Sbjct 557 AACCTCGAGGGTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451994363337440