Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq211 205 1e-47 seq1201 131 2e-25 seq2 91.5 2e-13 >seq211 Length=153984 Score = 205 bits (226), Expect = 1e-47 Identities = 870/1351 (64%), Gaps = 55/1351 (4%) Strand=Plus/Plus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| ||||||||| || | | ||| | | | |||||||||| ||||| ||| Sbjct 108355 TTGACAACCTGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGC 108414 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 |||||||| || ||||| |||| || |||| || ||| || |||||||| || | | Sbjct 108415 TCAAAGCATTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACG 108474 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC---- 116039 || | |||||| || | ||| | | | || |||||||||| | |||||||| Sbjct 108475 AGCAAGCTGTTACGCACACCATGCTGCTTGATCTGTTCCTTGAGAGAATCCCAGTCCCAG 108534 Query 116040 --GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCT 116097 || | | || ||| ||| ||||||| ||| | || |||| || || || || Sbjct 108535 AGGTCGGAGGGC-TTGACTC-----CCCACATGTCATATTGAAGGACGCCCTGTGAGACT 108588 Query 116098 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT-- 116155 || || || ||| | | | ||| | |||||| ||| || | | | || | | Sbjct 108589 GGGGAGCCTTCATAAGACGAATAGGTGCCCTCCTCCTTGGCTA--GCTGCACTGACATGG 108646 Query 116156 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 116215 ||| || ||||| || || ||||| || || |||| | | ||||| | Sbjct 108647 TGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTCAGTTCACGAGCCTCAGGCG 108706 Query 116216 AATCAAACGCGAGACGGCACAAA---ATAAATACATCCGCGAGACCTTGGACACCGAGGC 116272 | || |||| || || |||| | ||| |||| || ||||| ||||||||||||| Sbjct 108707 ACTCGAACGGCAGTCG---CAAAGCCAAGAATGCATCAGCAAGACCCTGGACACCGAGGC 108763 Query 116273 CAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCC 116329 |||| || ||||| | ||| || || ||||| |||| |||||||| || Sbjct 108764 CAATGGGCCGATGGCGCATGTTGCTGTTGCGAGC---CTCCGGGACGGGATAGTGGTTGA 108820 Query 116330 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 116389 ||||| | |||||| || || ||||||| |||| || || ||||| | | Sbjct 108821 CGTCGATGATCCTATTCAGGTTGCGAACAACAACCTGGGTGACATCGTGTAGCTTCTGGA 108880 Query 116390 AATCAAAACTGCGAGTCTCT-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 116448 | ||| | | | ||| || | || || | ||| || || | ||||||| || Sbjct 108881 AGTCATAGATTC-CGTCGCTGTAGTTCACGAAAGAAGGGAGAGCAAGGGACGCCAAGTTG 108939 Query 116449 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTC 116508 || || | | ||| || | | |||||| || |||||||| || | || || || Sbjct 108940 CAGACGGCGACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGCAAAGGTTGGAGCTT 108999 Query 116509 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT-ACACGCATCCTTGTAGAGCAT 116567 ||||||||| | ||||| || || ||| ||| || | ||||||||||||||| Sbjct 109000 CGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG-ATCCTTGTAGAGCAT 109058 Query 116568 ATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTG 116626 | || | || ||||| || |||| || |||||| || | ||| | | || | ||| Sbjct 109059 GAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCAGAGCTTCTG-GGCCT 109117 Query 116627 GCACAGTGGCGTTGGCTCGCCCCT--CCT----CCTCGTACTTTGTGTAGAGGGCCTCAA 116680 || ||| || ||| |||| ||| ||||||||| ||| | ||| || | Sbjct 109118 TCA---TGGTCTT---TCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCTTCGA 109171 Query 116681 ACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCAT 116739 | || || ||| ||| || | || || || || | ||||| | || | ||| Sbjct 109172 ATTCCTC-GCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACATCAGTGTCCAG 109230 Query 116740 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 116799 | ||| || ||| || |||||||||||||| || |||||||| || || ||| || Sbjct 109231 TCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGG 109290 Query 116800 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 116859 || || || | || || | || || || || | |||||||| || | || Sbjct 109291 TCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAAACTCGAAGACG 109350 Query 116860 TCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGG 116916 || || ||||| || || ||||| | || | | || ||| ||| ||||| Sbjct 109351 TCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGG 109410 Query 116917 TTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGG 116976 | ||||| | || || ||| || ||||| ||||| || | | ||| | || | Sbjct 109411 TCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACACCGTTGGAGGTG 109470 Query 116977 CCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAA 117034 ||||| || || ||| || ||| | |||| | || ||||| | | ||||| Sbjct 109471 CCATTGGTGCCGGCGATGTAGGAGCC--AGTGGCACGGATGCGGTGGACATTTAGACCAA 109528 Query 117035 TACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGA 117094 | || || ||| ||||| || ||||| | | ||| || ||||||| || || | Sbjct 109529 TGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTCAA 109588 Query 117095 TCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAG 117154 | ||||| |||| | ||| ||| |||||| ||||| |||| | || ||||| | Sbjct 109589 TAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGCCTGGGGAGTACCGG 109648 Query 117155 CGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 ||||||| | || || | |||||| |||| Sbjct 109649 CGTTGAACAATGTGGGCGAAGCGTGGGTGAA 109679 >seq1201 Length=295393 Score = 131 bits (144), Expect = 2e-25 Identities = 345/522 (66%), Gaps = 11/522 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || |||||||||||| |||||||||||||| || || |||||| ||||| Sbjct 156502 GCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACCG 156561 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | |||||| || | || | || ||||||||| Sbjct 156562 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATG 156621 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---A 127696 ||||| || || || |||| || |||| ||| |||| ||||||||| || Sbjct 156622 CCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGG---TGGACTTTGTGTCCGTG 156678 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | ||| || ||||| | ||||| || ||| || |||| ||| | ||| || | Sbjct 156679 ATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTTG 156738 Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 127816 ||||| | | | | || || || ||||| | || ||||| || || || Sbjct 156739 AAGAGATAGGTACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGTC 156798 Query 127817 TCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 127875 ||| ||| | | | ||| || | ||| | ||||||| ||||||| ||| | Sbjct 156799 TCGGAGTGAATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGAC 156857 Query 127876 CTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 127935 ||| || || | | ||| | | | |||||| || || || ||||| | || Sbjct 156858 CTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGGC 156917 Query 127936 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGT---TCAGGGTCTTCCA 127992 || || || || || | ||||| | || |||| |||| || | | ||||| Sbjct 156918 GAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCA 156977 Query 127993 GTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||| ||||||||| || | ||| | |||||| |||||||| Sbjct 156978 GTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCA 157019 >seq2 Length=655221 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 ||| | ||| || |||||||||||||| | ||| || || || | ||| || | Sbjct 258577 ACCAATGGCATCGATTTCGTCAATGAAGATGATGCAGGGCGCGTTCTTACGAGCCGTGGC 258636 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 |||| || |||||||| | ||||||||| || |||||||| ||||| | | | | Sbjct 258637 GAAGAGGTCGCGCACTCTGGAAGGACCGACACCGACGAACATCTCGACAAACTCAGAGCC 258696 Query 12995 GGA-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 ||| || | || |||||| ||| || || || || |||| ||| || || |||| Sbjct 258697 GGAGACGCT-GAAGAAGGGAACGCCAGACTCGCCTGCCGTGGCCTTGGCCAGAAGCGTCT 258755 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || || || || || | ||||| ||||||||| || ||| ||||||| Sbjct 258756 TACCAGTTCCAGGGGGTCCAGAGAGAATGGCACCACGCGGAATCTTGGCACC 258807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613495205934240