Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq211 205 1e-47
seq1201 131 2e-25
seq2 91.5 2e-13
>seq211
Length=153984
Score = 205 bits (226), Expect = 1e-47
Identities = 870/1351 (64%), Gaps = 55/1351 (4%)
Strand=Plus/Plus
Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923
|||||||| ||||||||| || | | ||| | | | |||||||||| ||||| |||
Sbjct 108355 TTGACAACCTGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGC 108414
Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983
|||||||| || ||||| |||| || |||| || ||| || |||||||| || | |
Sbjct 108415 TCAAAGCATTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACG 108474
Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTC---- 116039
|| | |||||| || | ||| | | | || |||||||||| | ||||||||
Sbjct 108475 AGCAAGCTGTTACGCACACCATGCTGCTTGATCTGTTCCTTGAGAGAATCCCAGTCCCAG 108534
Query 116040 --GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCT 116097
|| | | || ||| ||| ||||||| ||| | || |||| || || || ||
Sbjct 108535 AGGTCGGAGGGC-TTGACTC-----CCCACATGTCATATTGAAGGACGCCCTGTGAGACT 108588
Query 116098 GGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT-- 116155
|| || || ||| | | | ||| | |||||| ||| || | | | || | |
Sbjct 108589 GGGGAGCCTTCATAAGACGAATAGGTGCCCTCCTCCTTGGCTA--GCTGCACTGACATGG 108646
Query 116156 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGG 116215
||| || ||||| || || ||||| || || |||| | | ||||| |
Sbjct 108647 TGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTCAGTTCACGAGCCTCAGGCG 108706
Query 116216 AATCAAACGCGAGACGGCACAAA---ATAAATACATCCGCGAGACCTTGGACACCGAGGC 116272
| || |||| || || |||| | ||| |||| || ||||| |||||||||||||
Sbjct 108707 ACTCGAACGGCAGTCG---CAAAGCCAAGAATGCATCAGCAAGACCCTGGACACCGAGGC 108763
Query 116273 CAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGATAAAAATTCC 116329
|||| || ||||| | ||| || || ||||| |||| |||||||| ||
Sbjct 108764 CAATGGGCCGATGGCGCATGTTGCTGTTGCGAGC---CTCCGGGACGGGATAGTGGTTGA 108820
Query 116330 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 116389
||||| | |||||| || || ||||||| |||| || || ||||| | |
Sbjct 108821 CGTCGATGATCCTATTCAGGTTGCGAACAACAACCTGGGTGACATCGTGTAGCTTCTGGA 108880
Query 116390 AATCAAAACTGCGAGTCTCT-TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTA 116448
| ||| | | | ||| || | || || | ||| || || | ||||||| ||
Sbjct 108881 AGTCATAGATTC-CGTCGCTGTAGTTCACGAAAGAAGGGAGAGCAAGGGACGCCAAGTTG 108939
Query 116449 CACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTC 116508
|| || | | ||| || | | |||||| || |||||||| || | || || ||
Sbjct 108940 CAGACGGCGACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGCAAAGGTTGGAGCTT 108999
Query 116509 TTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT-ACACGCATCCTTGTAGAGCAT 116567
||||||||| | ||||| || || ||| ||| || | |||||||||||||||
Sbjct 109000 CGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG-ATCCTTGTAGAGCAT 109058
Query 116568 ATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTG 116626
| || | || ||||| || |||| || |||||| || | ||| | | || | |||
Sbjct 109059 GAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCAGAGCTTCTG-GGCCT 109117
Query 116627 GCACAGTGGCGTTGGCTCGCCCCT--CCT----CCTCGTACTTTGTGTAGAGGGCCTCAA 116680
|| ||| || ||| |||| ||| ||||||||| ||| | ||| || |
Sbjct 109118 TCA---TGGTCTT---TCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCTTCGA 109171
Query 116681 ACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCAT 116739
| || || ||| ||| || | || || || || | ||||| | || | |||
Sbjct 109172 ATTCCTC-GCCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACATCAGTGTCCAG 109230
Query 116740 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 116799
| ||| || ||| || |||||||||||||| || |||||||| || || ||| ||
Sbjct 109231 TCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAAAGG 109290
Query 116800 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 116859
|| || || | || || | || || || || | |||||||| || | ||
Sbjct 109291 TCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAAACTCGAAGACG 109350
Query 116860 TCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGG 116916
|| || ||||| || || ||||| | || | | || ||| ||| |||||
Sbjct 109351 TCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCACCCTGG 109410
Query 116917 TTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGG 116976
| ||||| | || || ||| || ||||| ||||| || | | ||| | || |
Sbjct 109411 TCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACACCGTTGGAGGTG 109470
Query 116977 CCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAA 117034
||||| || || ||| || ||| | |||| | || ||||| | | |||||
Sbjct 109471 CCATTGGTGCCGGCGATGTAGGAGCC--AGTGGCACGGATGCGGTGGACATTTAGACCAA 109528
Query 117035 TACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGA 117094
| || || ||| ||||| || ||||| | | ||| || ||||||| || || |
Sbjct 109529 TGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTCAA 109588
Query 117095 TCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAG 117154
| ||||| |||| | ||| ||| |||||| ||||| |||| | || ||||| |
Sbjct 109589 TAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGCCTGGGGAGTACCGG 109648
Query 117155 CGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185
||||||| | || || | |||||| ||||
Sbjct 109649 CGTTGAACAATGTGGGCGAAGCGTGGGTGAA 109679
>seq1201
Length=295393
Score = 131 bits (144), Expect = 2e-25
Identities = 345/522 (66%), Gaps = 11/522 (2%)
Strand=Plus/Plus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || |||||||||||| |||||||||||||| || || |||||| |||||
Sbjct 156502 GCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACCG 156561
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
||||||||||| |||||||| | |||||| || | || | || |||||||||
Sbjct 156562 GGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATG 156621
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---A 127696
||||| || || || |||| || |||| ||| |||| ||||||||| ||
Sbjct 156622 CCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGG---TGGACTTTGTGTCCGTG 156678
Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756
| ||| || ||||| | ||||| || ||| || |||| ||| | ||| || |
Sbjct 156679 ATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTTG 156738
Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTT 127816
||||| | | | | || || || ||||| | || ||||| || || ||
Sbjct 156739 AAGAGATAGGTACGCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGTC 156798
Query 127817 TCGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTAT 127875
||| ||| | | | ||| || | ||| | ||||||| ||||||| ||| |
Sbjct 156799 TCGGAGTGAATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGAC 156857
Query 127876 CTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 127935
||| || || | | ||| | | | |||||| || || || ||||| | ||
Sbjct 156858 CTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGGC 156917
Query 127936 AAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGT---TCAGGGTCTTCCA 127992
|| || || || || | ||||| | || |||| |||| || | | |||||
Sbjct 156918 GAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCA 156977
Query 127993 GTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
||||| ||||||||| || | ||| | |||||| ||||||||
Sbjct 156978 GTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCA 157019
>seq2
Length=655221
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934
||| | ||| || |||||||||||||| | ||| || || || | ||| || |
Sbjct 258577 ACCAATGGCATCGATTTCGTCAATGAAGATGATGCAGGGCGCGTTCTTACGAGCCGTGGC 258636
Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994
|||| || |||||||| | ||||||||| || |||||||| ||||| | | | |
Sbjct 258637 GAAGAGGTCGCGCACTCTGGAAGGACCGACACCGACGAACATCTCGACAAACTCAGAGCC 258696
Query 12995 GGA-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053
||| || | || |||||| ||| || || || || |||| ||| || || ||||
Sbjct 258697 GGAGACGCT-GAAGAAGGGAACGCCAGACTCGCCTGCCGTGGCCTTGGCCAGAAGCGTCT 258755
Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105
| || || || || || | ||||| ||||||||| || ||| |||||||
Sbjct 258756 TACCAGTTCCAGGGGGTCCAGAGAGAATGGCACCACGCGGAATCTTGGCACC 258807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613495205934240
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