Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1201 168 1e-36 seq211 109 9e-19 >seq1201 Length=295393 Score = 168 bits (186), Expect = 1e-36 Identities = 359/531 (68%), Gaps = 4/531 (1%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| ||||| ||||||||| ||| || ||||| || || ||||||| ||||||||| | Sbjct 156491 ACAGAAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGA 156550 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | | || || ||||||| |||||| |||||||| || |||| || |||||||||| Sbjct 156551 AGGTTAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGC 156610 Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG 160094 | || ||||| ||||| ||||| ||||| || ||||| | || | || | || || | Sbjct 156611 TGAAGAAGATGCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGTGGACTTTG 156670 Query 160095 TGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGA 160154 |||| | |||| | |||||| ||||||||||| |||||| || ||| |||| Sbjct 156671 TGTCCGTGATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGA 156730 Query 160155 CGGCGTTAAACA-ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTC 160213 |||||| || | || || | ||| ||||| || || | || || Sbjct 156731 TGGCGTTGAAGAGATAGGTAC-GCTGGGCAGGCTCCTTAATGTAGGTGTCGATGAGAAGG 156789 Query 160214 GAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCC 160273 ||||| | || | ||| | || || || ||||| ||| |||||| | |||| Sbjct 156790 GAGTAAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGCGCC 156849 Query 160274 TCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCG 160333 || | ||| || || | ||| | | | |||| || |||| || | |||||| Sbjct 156850 TCGGGGACCTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCG 156909 Query 160334 GCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTC 160393 | || || ||||| || | | |||||||||||| | |||| || | ||||| | Sbjct 156910 GAAGCGGCGAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTG 156969 Query 160394 TTTTCCCAGT-GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | ||||| ||| | || | || |||||||| ||| || || |||| Sbjct 156970 TTGTTCCAGTCGTG-GAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCA 157019 >seq211 Length=153984 Score = 109 bits (120), Expect = 9e-19 Identities = 387/592 (65%), Gaps = 12/592 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 || ||| || || |||||||||| | | |||| | ||| | | ||| |||||||||| Sbjct 108006 CTGGTCGACGGTAAACTGAATGGGGGCAGCAGCAG-CTTGCGTGCGCAGGTAGTACATGC 108064 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 ||||||| || || || ||| || | |||||| || | |||| || | | | Sbjct 108065 CGGTCTTCAGCCCTAGCTTCCAGCCTGCGAAATGCATGCTAGTGATCTTGCCCATGGTCG 108124 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 |||| |||||||||||| || |||||| |||||||| ||||||||| || || ||| Sbjct 108125 GGTCTTTCATGTGAATGTTGAGGGACTGGGACTGGTCGAT-AAAGGCGCCACGGTCGGCG 108183 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 ||||| | | | ||| || ||||| ||||| || || ||| ||| | | || | Sbjct 108184 GCCATCTGAACGACGGTACGTTGGGAAATTTCCCAGACGGTTTTGTACAGGGC-CTTGAC 108242 Query 204077 TGTTGAGGCACATCTT-CCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCC 204134 | || | || || | || ||| | ||||| || || || || | | || Sbjct 108243 CTCGGCGGGA-ATGTTGGGAATGTTCTGCACGGAGCCATTCTCAGCAATAATGCGGTTCT 108301 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | | || ||||| ||||| || || ||| | || ||||||| | Sbjct 108302 TCATGGCATCAGACCACAAGCCCATGTCGACGAGGTCCTTGAGGAGCCAAGGGTTGACAA 108361 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 |||||| || || | || || | || | | | |||| |||| | || || || Sbjct 108362 CCTGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGGCTCAAAGC 108421 Query 204255 CCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGG 204314 ||||||||||| | |||||| | || ||||| || |||||||| || | ||||| | Sbjct 108422 ATTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGACGAGCAAGC 108481 Query 204315 AGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA--TCGC 204372 ||| |||||||| | | | || | ||| ||||| |||||| | ||| Sbjct 108482 TGTTACGCACACCATGCTGCTTGATCTGTTCCTTGAGAGAATCCCAGTCCCAGAGGTCGG 108541 Query 204373 ACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424 | ||| || || ||||||||||| | |||| || ||| || ||||||| Sbjct 108542 A--GGGCTTGACTCCCCACATGTCATATTGAAGGACGCCCTGTGAGACTGGG 108591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795139654715840