Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq643 149 7e-31 seq835 138 1e-27 seq442 129 7e-25 seq428 102 9e-17 seq1544 89.7 6e-13 >seq643 Length=80414 Score = 149 bits (164), Expect = 7e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || || || | || |||||||| ||||| ||||||||||| || ||||| || Sbjct 65246 CGCAGGACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 65305 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||| |||||||| |||| |||||||||||||| || | || ||||||| Sbjct 65306 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 65365 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | |||||| || ||||| || | ||||| Sbjct 65366 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 65425 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| || || || || ||||| ||||| Sbjct 65426 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 65460 >seq835 Length=459924 Score = 138 bits (152), Expect = 1e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || ||||| |||| || ||||||||||||||||| | Sbjct 159512 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGA 159453 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||||||||||||||||| || | || |||||||||| |||||| ||||| | Sbjct 159452 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 159393 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||| || || || || | || ||||| || |||||||| || || || | Sbjct 159392 CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 159333 Query 46584 A 46584 | Sbjct 159332 A 159332 >seq442 Length=625744 Score = 129 bits (142), Expect = 7e-25 Identities = 140/183 (77%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || || || |||| |||||||||||||| ||||| Sbjct 417452 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCAGCGAA 417511 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||| ||| |||||| ||||| ||| Sbjct 417512 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTGGACTTGA-CGT 417570 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||||| || ||||| || | |||||||| ||||| || || || || | Sbjct 417571 TGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGA 417630 Query 46581 CAA 46583 ||| Sbjct 417631 CAA 417633 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||||| || ||||| |||| || |||||||| || || || Sbjct 417224 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGCTTACCAGCAAA 417283 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 417284 GATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 417342 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| ||| ||||| || | || || || ||||| ||||| || || | Sbjct 417343 TGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCTTGCCGGTCAGGGTCTTCA 417402 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 417403 CGAAAATCTGCAT 417415 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || || | ||||| | || || ||||||||||||||||| Sbjct 417738 TCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAA 417797 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||||| || | || |||||| ||| |||||| ||| | | Sbjct 417798 ATAAGACGTTGCTGGTCGGGGGGGATGCCCTCCTTATCCTGGATCTTAGACTTCACATTG 417857 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| || ||||| || | |||||||| ||||| || || || || || Sbjct 417858 TCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACG 417917 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 417918 AAGATCTGCAT 417928 >seq428 Length=571 Score = 102 bits (112), Expect = 9e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||||| ||||||||||| |||| | ||||| | || || Sbjct 357 ACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTCA 416 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| ||||| |||||||| || | || | | || ||||| Sbjct 417 AGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTGA 476 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||||| | | | |||||||| || || || | ||||||||||| Sbjct 477 ATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTTC 536 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || || || ||||| || || || |||||||||| Sbjct 537 CCGGTTAGGGTTTTCACGAAAATCTGCATTTTGC 570 >seq1544 Length=892 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | || ||||| ||||| |||||||| | | ||| | | Sbjct 392 ACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCC 451 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||||||||| ||||| || ||||| | |||||| || | || | | ||||| Sbjct 452 ATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTT 511 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCG 46553 ||| |||||| ||| | ||| | | | || || ||| || || || | | Sbjct 512 ATCCTGGATCTTAGCCTTCA-CGTTGTCGATGGTATCAGAACTC---TCAACCTCGAGGG 567 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||||| || || ||||| ||||||||||| ||||| Sbjct 568 TGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||||| ||| || || | || |||||| ||||||||||| || | Sbjct 152 GCCACCCCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGC 211 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 ||||| | |||| || |||||||| || || || ||||| | |||||| || | || Sbjct 212 AAGAGTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGG 271 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATT 46541 | | |||||| ||| |||||| ||| | ||| | | | ||||| |||| | Sbjct 272 AATACCCTCCTTATCCTGGATCTTAGCCTT-AACGTTGTCAATGGTGTCTGAGCTC---T 327 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | || || ||||| || || || || || |||||||| ||||| Sbjct 328 CGACCTCGAGGGTAATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCAT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565227349589280