Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1201 329 3e-85 seq1544 123 2e-23 seq643 122 9e-23 seq442 122 9e-23 seq835 111 2e-19 seq428 107 2e-18 seq632 105 7e-18 >seq1201 Length=295393 Score = 329 bits (364), Expect = 3e-85 Identities = 577/827 (70%), Gaps = 21/827 (3%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683 |||||||| || || || || || ||||| || ||| | ||| || || |||||||| Sbjct 156229 TTCTCAAAGAAGTTGGTCTTGCCA-CCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 156287 Query 132684 GGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 ||| | |||||| |||| |||||| || |||| | ||| | || || ||||| Sbjct 156288 GGCCGATTTGTAGACCTTGTCGTTGCCGAG-AG--CGACCAACAGACGATCAGCGACGAA 156344 Query 132741 CTCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGC 132797 ||||||||||||| ||| |||| | | || | ||||| || |||| ||||| || Sbjct 156345 CTCGATGTATTGCTTCATCAGGTT--GGAGTTCATGCCCAGGAGGGCGCAA-GGCAGAGC 156401 Query 132798 TTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGC 132857 ||||| || || ||||||||| ||| || ||| || || ||| || | Sbjct 156402 CTCGGTCAGGAACTCTTGCTCGATCTTGACAGCATCGACGATAATATCCTCAATCACCTG 156461 Query 132858 CGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCC 132917 | ||| || || ||| || || | ||| | ||| ||||||||| || | || Sbjct 156462 CTTGCTGGGGCGGTGCTTCAGGTGAGAGTACAGAAGGCAGGCAAAGTCGGTGTGGAGACC 156521 Query 132918 CTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTT 132977 ||| || | ||| ||||| |||||| ||| || | ||||||||||| || || || || Sbjct 156522 CTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACCGGGCATGAGACCACGCTTCTT 156581 Query 132978 GAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGC 133037 |||||| || |||| ||||||| || ||||||| |||||||||||| || || || Sbjct 156582 GAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATGCCCTCGACGGCGGCAAAGGC 156641 Query 133038 CACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGC 133097 || ||||||| | |||| |||| | | || | ||||||||||| ||||| || || Sbjct 156642 AACGAGGCGCTGGGCGAAGGTGGACTTTGTGTCCGTGATCCAGCGCAAGGCCCAGTCAGC 156701 Query 133098 CTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGA 133157 ||| | || ||| || || || ||||||||||| || | | || | | || | Sbjct 156702 CTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTTGAAGAGA--TAGGTACGCTGGGCA 156759 Query 133158 GGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATG 133215 || | | ||||||||||||||| || || | || ||||| | ||||||||| Sbjct 156760 GGCTCCTTAATGTAGGTGTCGATGAGAAGGGAGTAAGTCTCGGAGTGAATGTTCTCCATC 156819 Query 133216 GCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGC 133275 ||| || |||||||| ||||| ||||||||| ||||| ||||| || ||||||| Sbjct 156820 ATGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGGGGACCTGGACTTCGCCAGAGAAACGC 156879 Query 133276 TCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG 133335 || ||||| || || ||||||||||||||| |||||||| ||||| || | ||| | Sbjct 156880 TCAACCAGGTTCTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGAATGTGAGAG 156939 Query 133336 ATGAAATGGCGCTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGG 133392 ||||| | ||| | |||| || | | ||||||| | |||||||||| Sbjct 156940 ATGAAGTACTTCTCATCATCGTTGATCTTGTTGTTCCAGTCGTGGAGATCCTTGGACAAA 156999 Query 133393 TCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || | |||||| | ||||| || || |||||||| || |||||||| Sbjct 157000 TCAATCTCCTCAGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 157046 >seq1544 Length=892 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||||||||| ||||| || || || || |||||||| |||| |||||| Sbjct 838 AAGATGCAAATATTCGTTAAAACCCTGACCGGAAAGACCATCACTCTCGAGGTCGAGAGT 779 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | || |||| ||||| || ||||||||| | || Sbjct 778 TCTGACACCATCGACAACG-TCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGA 720 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| || || || || | ||| || |||||||| || |||| || || || ||||| Sbjct 719 CCAGCAACGTCTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGTACTCTTGCTGACTA 660 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| |||||| | || || ||| | || || ||| Sbjct 659 CAACATCCAGAAGGAATCAACCCTTCATCTTGTCCTCCGT 620 >seq643 Length=80414 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || || |||||| | || || ||| | || Sbjct 65460 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 65401 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 65400 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 65341 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| ||||||||| |||||||||| Sbjct 65340 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 65281 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||| || || || | || ||||| Sbjct 65280 ATCCAGAAGGAGAGC-ACCCTCCACCTCGTCCTGCG 65246 >seq442 Length=625744 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38256 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA- 38314 || || || ||||| ||||| ||||||||| |||| || ||| | | ||||| | | Sbjct 417631 GTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTAGCGACACTATCGAC 417572 Query 38315 AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCAT 38374 |||| | || || |||| || || ||||| |||||| ||||||| ||||| ||||| Sbjct 417571 AACG-TCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAGCAGCGTCTCAT 417513 Query 38375 TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||| ||||| ||||| || |||| || |||||| |||||||||||| || ||||| Sbjct 417512 CTTCGCTGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCCGACTACAACATTCAGAAGGA 417453 Query 38435 AGCGACGCTGCATTTGGTGCTGCG 38458 | || || || ||||| || || Sbjct 417452 GTCTACCCTTCACTTGGTCCTTCG 417429 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| | || Sbjct 417928 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCC 417869 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| || || ||||| || ||| ||||||| Sbjct 417868 GATACCATCGACAATGTGAAGTCTAAGATCCAGGATAAGGAGGGCATCCCCCCCGACCAG 417809 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || |||| ||| ||||| ||||| || || | |||||| | || |||||| Sbjct 417808 CAACGTCTTATTTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCTTGTCTGATTACAAC 417749 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| |||||| | || || || ||||| || ||| Sbjct 417748 ATCCAGAAGGAATCTACCCTTCACTTGGTTCTCCGT 417713 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || || ||| | || || ||| | | Sbjct 417415 ATGCAGATTTTCGTGAAGACCCTGACCGGCAAGACGATTACCTTAGAGGTGGAGTCGTCA 417356 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| ||||| ||||| || ||| ||||||| Sbjct 417355 GACACAATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 417297 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || |||| ||||||||| ||||||||| Sbjct 417296 GCAGCGTCTTATCTTTGCTGGTAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAA 417237 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| || ||||| |||| || || |||||||| || Sbjct 417236 CATTCAGAAGGAGTCGACCCTCCACTTGGTGCTTCG 417201 >seq835 Length=459924 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || |||||| | Sbjct 159332 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCCGACACGATC 159391 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| ||||||| ||||| | Sbjct 159392 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTG 159451 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || |||| ||||||||| ||||||||||||||| ||| Sbjct 159452 ATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAG 159511 Query 38433 G 38433 | Sbjct 159512 G 159512 >seq428 Length=571 Score = 107 bits (118), Expect = 2e-18 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| ||||| || || || |||||||||||| |||| |||||| | Sbjct 568 AAAATGCAGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAGC 509 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | ||||| | | | || | | |||| || || | |||||||| || || || | | Sbjct 508 AGCGACACCATCGACAATG--TCAAGACCAAGATTCAAGACAAAGAAGGTATCCCTCCGG 451 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || ||||| | |||| ||| || || ||||| || || | |||||| | ||| | Sbjct 450 ATCAGCAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGATT 391 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||| ||||| |||||| | || || ||| | || || Sbjct 390 ACAATATCCAGAAGGAATCTACTCTTCATCTTGTTCT 354 >seq632 Length=500 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||||||||| ||||| | || || ||| ||| Sbjct 23 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACAATCACTCTTGAGGTTGAGCCCAGT 82 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| |||||| || || | |||||||| ||||||||| | |||||| Sbjct 83 GATACTATAGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCCCCTGACCAA 142 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || || |||||| |||| || | | || | |||||||||| Sbjct 143 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGACTACAAC 202 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || ||| | || || ||| Sbjct 203 ATCCAGAAGGAGTCTACCCTTCATCTTGTCCTTCGT 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500163021621760