Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq235 131 7e-25 seq428 114 5e-20 seq632 105 3e-17 seq1544 98.7 4e-15 >seq235 Length=668 Score = 131 bits (144), Expect = 7e-25 Identities = 275/402 (68%), Gaps = 10/402 (2%) Strand=Plus/Minus Query 451862 TTACATGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAGGAGGTTCT 451921 |||| |||| ||||||| |||| || ||| |||| | || || |||||||| || Sbjct 397 TTACGTGATGCTAAAATGGATAAACGTAGTATTAATGAGGTCGTTCTGGTAGGAGGCTCC 338 Query 451922 ACACGAATTCCTAAAATTCAAGATATGTTGTCTTCTTATTTTGGA-GGAAAACAACTATG 451980 ||| | || || ||||| || | |||||| | | || || | |||||| | || Sbjct 337 ACAAGGATACCAAAAATACAGAAAATGTTGACAGAAT-TTATGAATGGAAAAGACTTAAA 279 Query 451981 TAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCT 452040 ||| |||||||||||||||||||| || ||||||||||| || || || |||||| | Sbjct 278 TAAATCAGTAAATCCTGATGAAGCTGTGGCCTATGGTGCTGCTGTACAGGCTGCTATTTT 219 Query 452041 AACAGGTTCAGATGATGA-AAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTAT 452099 | | ||| | ||| | ||||| |||| | || ||||||||||| | || | | Sbjct 218 ATCTGGTGACTCTAGTGACACAATTA-AAGATGTACTTTTAGTAGATGTCGCTCCGTTGT 160 Query 452100 CTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCT- 452158 | || ||| | ||||| || || || | ||||| || | ||| | |||||| |||| Sbjct 159 CACTCGGAATAGAAACTGCAGGAGGTGTTATGACCAAACTTATTGA--GAGGAA-TTCTA 103 Query 452159 --ATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAA 452216 || || |||| |||||||||| ||| || || || |||| || | Sbjct 102 AAATACCAACTAAAGCTTCACAAACATTTACAACATATTCAGACAATCAGCCAGCAGTCA 43 Query 452217 CTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATA 452258 |||||| || ||||| || || |||| |||||| ||||| Sbjct 42 ATATTCAGGTATTTGAGGGGGAGCGTGTAATGACTAAAGATA 1 >seq428 Length=571 Score = 114 bits (126), Expect = 5e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGA-ATCAT 391107 |||| | |||||||| ||||| || || || ||||| || || || || || || | || Sbjct 566 AATGCAGATTTTCGTGAAAACCCTAACCGGGAAAACCATCACCCTCGAGGTCGAGAGCAG 507 Query 391108 CTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 | || | ||| || | | || || |||||||| || ||||| || ||||| |||| Sbjct 506 C-GACACCATCGACAATGTCAAGACCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATC 448 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227 | || ||||| |||||| | || || || |||||||||||| | || ||||| ||||| | Sbjct 447 AGCAGCGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGACGCACCTTGGCCGATTACA 388 Query 391228 ATATTGATAAGGATGCAACACTTCA 391252 |||| | ||||| | || ||||| Sbjct 387 ATATCCAGAAGGAATCTACTCTTCA 363 >seq632 Length=500 Score = 105 bits (116), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || ||||| || |||||||| ||||| | | Sbjct 23 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACAATCACTCTTGAGGTTGAGCCCAGT 82 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | ||||| || ||||| || || ||||||||||| ||||| ||| Sbjct 83 GATACTATAGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCCCCTGACCAA 142 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || ||||| | |||||||| ||||| ||| | || || || Sbjct 143 CAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGACTACAAC 202 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 203 ATCCAGAAGGAGTCTACCCTTCA 225 >seq1544 Length=892 Score = 98.7 bits (108), Expect = 4e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || ||||| || || || || ||||| || || || || ||||| ||| Sbjct 607 ATGCAGATCTTTGTTAAGACGCTCACCGGGAAAACCATCACCCTCGAGGTTGAGAGTTCT 548 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | || || || || |||||||||||||| ||||| ||||| Sbjct 547 GATACCATCGACAACGTGAAGGCTAAGATCCAGGATAAGGAAGGAATCCCTCCGGATCAG 488 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || || || || || |||||||| |||||||| || || || Sbjct 487 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGAAGGACTTTGGCTGACTACAAC 428 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATT 391261 || | ||||| |||| |||||| | || || Sbjct 427 ATCCAGAAGGAATCAACTCTTCACCTTGTGTT 396 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || |||||||||||||| || || || || || Sbjct 379 ATGCAGATCTTTGTGAAGACTCTTACCGGTAAAACTATTACCCTCGAGGTCGAGAGCTCA 320 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| |||| || || || |||||||| || |||||||| ||||| Sbjct 319 GACACCATTGACAACGTTAAGGCTAAGATCCAGGATAAGGAGGGTATTCCTCCGGATCAG 260 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || || || | || || || || ||||| ||||| ||| | || ||||| ||| Sbjct 259 CAGAGGTTGATCTTTGCGGGTAAGCAGCTGGAAGACGGAAGGACTCTTGCTGATTACAAT 200 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 199 ATCCAGAAGGAGTCGACCCTTCAC 176 Score = 91.5 bits (100), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||||||||| ||||| || || || || ||||| || || || ||| Sbjct 835 ATGCAAATATTCGTTAAAACCCTGACCGGAAAGACCATCACTCTCGAGGTCGAGAGTTCT 776 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | || || || || || |||||||||||||| ||||| || Sbjct 775 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCAG 716 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| | || ||| | || ||||| || || || || | ||| | || || || || Sbjct 715 CAACGTCTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGTACTCTTGCTGACTACAAC 656 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| |||| ||||| Sbjct 655 ATCCAGAAGGAATCAACCCTTCA 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975678809072912