Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq235 176 3e-38
>seq235
Length=668
Score = 176 bits (194), Expect = 3e-38
Identities = 350/513 (68%), Gaps = 4/513 (1%)
Strand=Plus/Plus
Query 517371 TATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTAT 517430
|||||||||| | | || || ||||| || | || ||| | ||| | | ||||| |
Sbjct 1 TATCTTTAGTCATTACACGCTCCCCCTCAAATACCTGAATATTGACTGCTGGCTGATTGT 60
Query 517431 CTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAA 517490
||||||| ||||||||| | || |||| || ||| | | || || |||||||
Sbjct 61 CTGAATATGTTGTAAATGTTTGTGAAGCTTTAGTTGGTATTTTAGAATTCCTCTCAATAA 120
Query 517491 TATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTA 517550
|||||||||| ||| ||||| ||||||| || || || | |||| |||||| ||||
Sbjct 121 GTTTGGTCATAACACCTCCTGCAGTTTCTATTCCGAGTGACAACGGAGCGACATCTACTA 180
Query 517551 GGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAG 517610
| | || || || | | ||| || | |||| | |||||| || || | |||||
Sbjct 181 AAAGTACATCTTTAATTGTGTCACTAGAGTCACCAGATAAAATAGCAGCCTGTACAGCAG 240
Query 517611 CACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAA 517670
||||||| || ||||||||||||||||| || | || ||||| | ||| ||||| | ||
Sbjct 241 CACCATAGGCCACAGCTTCATCAGGATTTACTGATTTATTTAAGTCTTTTCCATTCATAA 300
Query 517671 AATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 517729
| | || | | || ||| || || || || | | || ||||| || | || |
Sbjct 301 ATTCTGTCA-ACATTTTCTGTATTTTTGGTATCCTTGTGGAGCCTCCTACCAGAACGACC 359
Query 517730 TCATGCA-CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788
|||| | || | |||||||| ||| | ||| ||| | ||||| || ||||| |
Sbjct 360 TCATTAATACTACG-TTTATCCATTTTAGCATCACGTAAGGCCTTTTCTACTGGTTCTAA 418
Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848
|||||||||||||| ||| | |||||| ||| | ||||| || | | ||
Sbjct 419 TGTTGCTCTAAACAAGTCACCACACATTTCTTCAAATCTTGCTCTTGTTATTTTTGTATA 478
Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTC 517881
|||| |||| |||||||| || || | |||
Sbjct 479 GAAATCTGTTCCCTCGAACAATGAGTCTATTTC 511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780744789168184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |