Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq235 176 3e-38 >seq235 Length=668 Score = 176 bits (194), Expect = 3e-38 Identities = 350/513 (68%), Gaps = 4/513 (1%) Strand=Plus/Plus Query 517371 TATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTAT 517430 |||||||||| | | || || ||||| || | || ||| | ||| | | ||||| | Sbjct 1 TATCTTTAGTCATTACACGCTCCCCCTCAAATACCTGAATATTGACTGCTGGCTGATTGT 60 Query 517431 CTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAA 517490 ||||||| ||||||||| | || |||| || ||| | | || || ||||||| Sbjct 61 CTGAATATGTTGTAAATGTTTGTGAAGCTTTAGTTGGTATTTTAGAATTCCTCTCAATAA 120 Query 517491 TATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTA 517550 |||||||||| ||| ||||| ||||||| || || || | |||| |||||| |||| Sbjct 121 GTTTGGTCATAACACCTCCTGCAGTTTCTATTCCGAGTGACAACGGAGCGACATCTACTA 180 Query 517551 GGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAG 517610 | | || || || | | ||| || | |||| | |||||| || || | ||||| Sbjct 181 AAAGTACATCTTTAATTGTGTCACTAGAGTCACCAGATAAAATAGCAGCCTGTACAGCAG 240 Query 517611 CACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAA 517670 ||||||| || ||||||||||||||||| || | || ||||| | ||| ||||| | || Sbjct 241 CACCATAGGCCACAGCTTCATCAGGATTTACTGATTTATTTAAGTCTTTTCCATTCATAA 300 Query 517671 AATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATT 517729 | | || | | || ||| || || || || | | || ||||| || | || | Sbjct 301 ATTCTGTCA-ACATTTTCTGTATTTTTGGTATCCTTGTGGAGCCTCCTACCAGAACGACC 359 Query 517730 TCATGCA-CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 517788 |||| | || | |||||||| ||| | ||| ||| | ||||| || ||||| | Sbjct 360 TCATTAATACTACG-TTTATCCATTTTAGCATCACGTAAGGCCTTTTCTACTGGTTCTAA 418 Query 517789 ACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 517848 |||||||||||||| ||| | |||||| ||| | ||||| || | | || Sbjct 419 TGTTGCTCTAAACAAGTCACCACACATTTCTTCAAATCTTGCTCTTGTTATTTTTGTATA 478 Query 517849 ATAATCAATTCCTTCGAACAAAGAATCAACTTC 517881 |||| |||| |||||||| || || | ||| Sbjct 479 GAAATCTGTTCCCTCGAACAATGAGTCTATTTC 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780744789168184