Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq724 295 8e-75 seq968 174 2e-38 seq1235 131 2e-25 seq235 89.7 7e-13 >seq724 Length=526504 Score = 295 bits (326), Expect = 8e-75 Identities = 713/1077 (66%), Gaps = 8/1077 (1%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | |||||| || ||||| | || ||||| || || |||||||||||||| Sbjct 458911 TCACCAGACAGGATGGCAGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTG 458852 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || || || || | | | || || ||| Sbjct 458851 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGTAGTCGGAGATGAGCTTCTGGATGCGGGGG 458792 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || ||||||| ||||| |||| || || || |||||||| | | Sbjct 458791 ATACGGGTGGAACCGCCGACCAGGACGATCTCATGGACGAGGGACTTGTCGATCTTGGCG 458732 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || || || | || ||||| | |||| || || ||| Sbjct 458731 TCGGACAGGACGCGGTCAACGGGCTGGATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCC 458672 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| ||||| || ||||| || ||||| || | || ||| | | || || || Sbjct 458671 TCGAAACGGGCACGAGTGATGGAGGTGTAGAAGTCGATACCCTCGAACAGGGAGTCGATC 458612 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 ||||||| || || || | ||| || | || ||||| || ||||| || || || || Sbjct 458611 TCAATGGAGGTCTGGGCGGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCGGTGCGG 458552 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | ||| || || ||||| | ||| ||| | || ||||| || || || || ||||| Sbjct 458551 AGACGGCGGAGAGCACGAGCGTTGGAGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCG 458492 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | |||||| | ||| | ||||| || |||||||||||||| || || || Sbjct 458491 TTGACGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGGGTGTCACCA 458432 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 || || | ||||| || |||||||| | ||||| | | | || ||||| || || Sbjct 458431 GCAGTAGACTTGACCTCGAAGATACCCTCCTCAATAGTCAGGAGAGACACATCGAAAGTG 458372 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 |||||||| || || || ||||| ||||| || | || ||||| || || ||| Sbjct 458371 CCACCACCGAGATCGAAGATGAGGACGTTGCGCTCACCCTCAGCCTTCTTGTCAAGGCCG 458312 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 || ||||| || || || || || || || || ||||| || ||| ||||| ||||| Sbjct 458311 TAGGCGATGGCAGCGGCGGTAGGCTCGTTGATGATACGGAGGACGTTGAGGCCGGCAATG 458252 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | || || || || || || || || || ||||| |||||||| ||||| || | | Sbjct 458251 AGACCAGCGTCCTTGGTGGCCTGACGCTGAGAGTCGTTGAAGTAGGCGGGGACGGTGATG 458192 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| ||||| | ||| || || | || || | || ||| ||||| || Sbjct 458191 ACGGCGTTGGTGACCTGGCCACCAAGGTAGGCCTCAGCAGTCTCGCGCATCTTGGTGAGG 458132 Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849 ||||| | || ||||| || | | || || || || || || || ||||| || Sbjct 458131 ACCATGGCGGAGATCTCCTCGGGGGTGAAGGTCTTGGTCTCGCCCTTGAACTCAACCTCG 458072 Query 7850 ATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908 || | ||| || || | | | || ||||| | | | | ||||||||| | Sbjct 458071 ATGACGGGCTT----GCTGTTCTTGTCGACGACCTTGAAGGGGAAGTGCTTCATATCGGC 458016 Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968 || |||| ||| ||||| | || || |||||||| || || || || ||||| Sbjct 458015 CTGAACCTCAGAGTCGTTGAACTTGCGACCAATCAGACGCTTGGCGTCGAAGACGGTGTT 457956 Query 7969 TTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTC 8028 | |||||||||||| |||||||| || || || || || || || || | || Sbjct 457955 GTGGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCACCAATCAGGCGCTC---GGTGTC 457899 Query 8029 CGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTC 8085 | || ||||| || || ||||| || || || || |||||||| ||||| || || Sbjct 457898 GTTGAAGGCGACATAGGAAGGGGTGGTGCGGTTACCCTGGTCGTTGGCAATGATCTC 457842 >seq968 Length=375018 Score = 174 bits (192), Expect = 2e-38 Identities = 365/541 (67%), Gaps = 5/541 (1%) Strand=Plus/Minus Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 ||| ||||| ||||| |||||||| || || ||| || |||| ||| | | || Sbjct 132026 CAGCTCCTCGAAACGAGCACGGGTGATCTGGGTGGTGAAGTCCTCGCCATCGAAGAGAGA 131967 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 ||||| || ||||| || || || ||||| | || ||||| || ||||| || || Sbjct 131966 GTCAATCTCGATGGTGGTCTGGGCACCGGAAGAAAGGGTACGCTTGGCACGCTCGCAAGC 131907 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422 || || | |||||| |||||||| | || ||||| | || ||||| || || | Sbjct 131906 AGTACGGAGACGACGGAGGGCACGGGCGTCGCCGGAGAGGTCCTTCTTGGTCTTGCGCTG 131847 Query 7423 AAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 || || | | |||| |||| | || | | ||||| || | ||||||||||| | Sbjct 131846 GAAGTCCTTCTTGCAGTGCTCGA-GCAGGTTGGTGTCGAAGTCCTGGCCACCCAAGTGGG 131788 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || ||||| || ||||| |||| ||| || | ||||| | | || |||| Sbjct 131787 TGTCACCAGCGGTAGCCTTGACGGTGAAGACACCGCCCTGGATGTTCAGGAGGGAGACAT 131728 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT---CGTATCGTCGTCTTTGTTCT 7598 | || ||||||||||||| ||| | ||||| ||||| | | | || ||| Sbjct 131727 CGAAAGTACCACCACCCAAGTCGTAGATGAGGACGTTGCGCTCCTTGCCGGACTTGCCAG 131668 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| || || || || || || || || || || ||||| || ||||| Sbjct 131667 CACCAAGACCGTAGGCAATGGCGGCAGCAGTGGGCTCGTTGATGATACGGAGGACGTTCA 131608 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||||||||| | | || || || || || || || || ||||| |||||||| | Sbjct 131607 GGCCAGCAATGGCACCGGCGTCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCAG 131548 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 |||| || | || || | | ||| ||||| |||| | | || ||||| || |||| Sbjct 131547 GGACGGTAATAACGGCCTTCTCGACCTTCTTGCCGATCTTAGTCTCGGCGATCTCCTTCA 131488 Query 7779 T 7779 | Sbjct 131487 T 131487 >seq1235 Length=290713 Score = 131 bits (144), Expect = 2e-25 Identities = 232/338 (69%), Gaps = 3/338 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || || || || || || || | ||| Sbjct 39763 TCGAAATCCTCACCACCCAAGTGGGTGTCACCAGCAGTAGCCAGAACCTCGAAAACACCC 39704 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | || || ||||| || ||||||||||| ||||| | | || | Sbjct 39703 TCGTCGATGGAAAGCAGGGAGACATCGAAGGTACCACCACCAAGGTCGTAGACAAGAATC 39644 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | | | || | | | |||| || |||||||| || ||||| || || || || || Sbjct 39643 TGCCTCTCCTTACC---GGTCTTGTCAAGACCGTAGGCAATAGCGGCGGCGGTGGGCTCG 39587 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | ||||||||| ||| || || || || || | ||||| || || || || || Sbjct 39586 TTGACAATACGAAGGACGTTAAGACCGGCGATGGTACCGGCATCCTTGGTGGCCTGGCGC 39527 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| || || || ||||| || | || || ||||| || || Sbjct 39526 TGGTTGTCGTTGAAGTAGGCAGGAACAGTGACGACGGCATGGGTAACCTTCTTGCCCAGG 39467 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 || || || |||| || ||||| ||| |||| ||| Sbjct 39466 TAGGACTCGGCGACCTCCTTCATCTTGCCCAGAATCAT 39429 >seq235 Length=668 Score = 89.7 bits (98), Expect = 7e-13 Identities = 310/481 (64%), Gaps = 6/481 (1%) Strand=Plus/Plus Query 6890 TTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCG 6949 |||| ||| || | | ||| ||| ||||| |||||||| ||| || |||||| Sbjct 90 TTAGTTGGTATTTTAGAATTCCTCTCAATAAGTTTGGTCATAACACCTCCTGCAGTTTCT 149 Query 6950 AGTCCAAGAGACAGAGGTGTCACGTCCA---AGAGTAACAGGTCTTGAACAGATTCGTTC 7006 | ||| || |||| || | || || | | |||| || |||| || | || | Sbjct 150 ATTCCGAGTGACAACGGAGCGACATCTACTAAAAGTA-CA--TCTTTAATTGTGTCACTA 206 Query 7007 CCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGG 7066 ||||| | ||| || || || || || | || || || || || || ||||| || Sbjct 207 GAGTCACCAGATAAAATAGCAGCCTGTACAGCAGCACCATAGGCCACAGCTTCATCAGGA 266 Query 7067 TTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTC 7126 || | | |||||| | ||||| || || | | | || | ||||||| || ||||| Sbjct 267 TTTACTGATTTATTTAAGTCTTTTCCATTCATAAATTCTGTCAACATTTTCTGTATTTTT 326 Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186 || || | ||| || || || |||| ||||| ||||| | | |||||| || || Sbjct 327 GGTATCCTTGTGGAGCCTCCTACCAGAACGACCTCATTAATACTACGTTTATCCATTTTA 386 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 | || || | | ||||| || ||||| | | | |||||||| ||||| | Sbjct 387 GCATCACGTAAGGCCTTTTCTACTGGTTCTAATGTTGCTCTAAACAAGTCACCACACATT 446 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 || ||||| | ||| | || || |||||||||||| || ||| | || || || Sbjct 447 TCTTCAAATCTTGCTCTTGTTATTTTTGTATAGAAATCTGTTCCCTCGAACAATGAGTCT 506 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 ||||| | | | | || | ||||| |||| ||||| | ||||| |||||| Sbjct 507 ATTTCTACACTCGCCTCTGTACTACTTGATAATGTTCTTTTTGCTCTTTCACAAGCCGTT 566 Query 7367 C 7367 | Sbjct 567 C 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635120383153760