Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq211 168 8e-37
seq1201 127 3e-24
seq2 84.2 3e-11
seq790 82.4 9e-11
>seq211
Length=153984
Score = 168 bits (186), Expect = 8e-37
Identities = 914/1438 (64%), Gaps = 41/1438 (3%)
Strand=Plus/Minus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|||||| ||||| ||||||| || || | || ||| || || ||| |||| ||
Sbjct 109772 CCACAGCACATGATCATGCGCGTTGCCGTTGGCATCTGGGGCGACGATGTTGAGCGCGTC 109713
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTA-TG-TTCATCCACGCAACACCAACCCTCT 111729
| ||||||||| || |||||| | | | || |||| |||||| | || || | |
Sbjct 109712 ATTGAGACATACAACTTGATGTC--GAGCAAGTGCTTCACCCACGCTTCGCCCACATTGT 109655
Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789
||||||| ||||| || | || |||| || || || | | | ||||| |
Sbjct 109654 TCAACGCCGGTACTCCCCAGGCACAGCTGTCGTCCTGCTTTCTCGTCGACATGAAGGAAG 109595
Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849
| || || | ||||| |||| |||||| | || ||| || ||||| ||| |
Sbjct 109594 ACTCTATTGAGGGCATCTACGACACTCTGAAGACCTGCGCCATGATATCAAAAATGGCCG 109535
Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTAC 111907
| || || || | | |||| || | |||| | ||| || | | || ||
Sbjct 109534 GCGGCATTGGTCTAAATGTCCACCGCATCCGTGCCACT--GGCTCCTACATCGCCGGCAC 109477
Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967
||||| || | ||| ||| || ||||| ||||| || ||| ||| || |||||
Sbjct 109476 CAATGGCACCTCCAACGGTGTTACCCCTATGCTCCGCGTCTTCAACAACACCGCCCGCTA 109417
Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021
||| |||| | ||| ||| | | || | | || |||| || ||||| ||
Sbjct 109416 TGTCGACCAGGGTGGCAACAAGCGCCCC---GGTGCCTTTGCCATCTACCTCGAGCCCTG 109360
Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081
||| || || || | ||||| | || | || ||||| || | ||||||| ||
Sbjct 109359 GCATGCCGACGTCTTCGAGTTTTTGGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCG 109300
Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141
||| || || ||| ||| || ||||| || ||||||||||||||| |||| ||| |
Sbjct 109299 TGCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGCGAGTGGAGAA 109240
Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGG 112200
|| || | ||| | || | ||||| || || || ||||| |||| ||| |||
Sbjct 109239 GAACGGTGACTGGACACTGATGTGTCCCAACGAGTGCCCGGGTCTTGCCGACTGCTATGG 109180
Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAGAAA---GTCGGGCGACTG 112254
||||| || |||||| | ||| ||||||||| |||| | |||| |||
Sbjct 109179 C-GAGGAATTCGAAGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGAAAGACCA 109121
Query 112255 CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 112314
|| || |||| || | ||| | || |||||| || | || || ||||| || |
Sbjct 109120 TGAAGGC-CCAGAAGC-----TCTGGTATGCCATTCTCGAGGCCCAGACTGAGACCGGCA 109067
Query 112315 CACCATATATGCTTTACAAAGACGCCTGT-AACCAAAAGAGTAATCAAAAGAATTTGGGT 112373
|| | ||||| ||||| || | || |||| ||||| || || |||||| | ||
Sbjct 109066 ACCCTTTCATGCTCTACAAGGAT-CATGCCAACCGCAAGAGCAACCAGAAGAATCTCGGC 109008
Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433
|| || |||||||| || || |||||| | || | | | | || |||
Sbjct 109007 ACCATTCGAAGCTCCAACCTTTGCACGGAAATCATTGAGTACTCGGCCCCTGACGAGGTC 108948
Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGAC 112492
|| || || ||| | || || | |||||||| | ||| | | ||| ||| | |
Sbjct 108947 GCCGTCTGCAACTTGGCGTCCCTTGCTCTCCCTTCTTTCGTGAACTACAGCGACGGAATC 108888
Query 112493 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGT 112552
| ||| | | || || ||||| || || | ||| ||||| || || |
Sbjct 108887 -TATGACTTCCAGAAGCTACACGATGTCACCCAGGTTGTTGTTCGCAACCTGAATAGGAT 108829
Query 112553 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612
|| || || || ||||| | ||||| || || ||| | || || ||
Sbjct 108828 CATCGACGTCAACCACTATCCCGTCCCGGAGGCTCGCAACAGCAACATGCGCCATCGGCC 108769
Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTG 112671
||||| ||||||||||| ||||| || |||| |||| | ||||| || | | || |
Sbjct 108768 CATTGGCCTCGGTGTCCAGGGTCTTGCTGATGCATTCTTGGCTTTG-CGACTGCCGTTCG 108710
Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731
| || || || ||| | || | || || ||||| || || ||||| ||||
Sbjct 108709 AGTCGCCTGAGGCTCGTGAACTGAACAAGAAGATCTTCGAGACCATCTACCACGCTGCTC 108650
Query 112732 TTG--AGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789
| | | ||| | || | || ||| || || | ||| | | ||| || ||
Sbjct 108649 TCACCATGTCAGTGC--AGCTAGCCAAGGAGGAGGGCACCTATTCGTCTTATGAAGGCTC 108592
Query 112790 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 112849
|||| ||||| || || ||||||| ||| ||||||| || || || | ||
Sbjct 108591 CCCAGTCTCACAGGGCGTCCTTCAATATGACATGTGGGGAGTCAAGCCCTCCGACCTCTG 108532
Query 112850 CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 112909
|||||||| |||||||||||| |||||| || | ||| | |||||||| | | |
Sbjct 108531 GGACTGGGATTCTCTCAAGGAACAGATCAAGCAGCATGGTGTGCGTAACAGCTTGCTCGT 108472
Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969
|| || |||||||| ||| || | || || |||| || || ||||||||||| ||
Sbjct 108471 CGCCCCCATGCCAACCGCCAGTACTTCCCAGATTCTGGGCAACAACGAATGCTTTGAGCC 108412
Query 112970 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027
||||| | |||||||| | | | | | | || || |||||| | ||||||||
Sbjct 108411 TTACACCTCCAACATCTACCAGCGTCGCGTCTTGGCTGGTGAGTTTCAGGTTGTCAAC 108354
>seq1201
Length=295393
Score = 127 bits (140), Expect = 3e-24
Identities = 201/287 (70%), Gaps = 6/287 (2%)
Strand=Plus/Minus
Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107
||||| |||| || |||||||| ||| || | | ||||| | |||||| |
Sbjct 156785 CTCATCGACACCTACATTAAGGAGCCTGCCCAGCGTACCTATCTCTTCAACGCCATCGAC 156726
Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 102164
|| | || || || | ||||| || || ||||| || ||| | || ||||||
Sbjct 156725 ACCATCCCCTGCATCCGTAAGAAGGCTGACTGGGCCTTGCGCTGGATCACGGACACAAAG 156666
Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224
|| |||| || |||| ||| | || ||||| || ||||| |||||||||
Sbjct 156665 TCCA---CCTTCGCCCAGCGCCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGC 156609
Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284
||| | ||| | | || | |||||||||||||| ||||||||||| ||||| ||||
Sbjct 156608 GGTGCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTAACCTTC 156549
Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||||||||| ||||| ||||| ||||| |||||| || |||||
Sbjct 156548 TCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGC 156502
>seq2
Length=655221
Score = 84.2 bits (92), Expect = 3e-11
Identities = 158/228 (69%), Gaps = 6/228 (3%)
Strand=Plus/Plus
Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123
|||||| || || |||||||||| |||||| || || | ||||| | |||||
Sbjct 258583 GGCATCGATTTCGTCAATGAAGATGATGCAGGGCGCGTTCTTACGAGCCGTGGCGAAGAG 258642
Query 16124 ATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA- 16180
|| || ||| || | | || ||||| || |||||||| ||||| | | | ||||
Sbjct 258643 GTCGCG--CACTCTGGAAGGACCGACACCGACGAACATCTCGACAAACTCAGAGCCGGAG 258700
Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240
|| || | |||||| || ||| || || || |||| ||| ||||| ||||||||
Sbjct 258701 ACGCTGAA-GAAGGGAACGCCAGACTCGCCTGCCGTGGCCTTGGCCAGAAGCGTCTTACC 258759
Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288
|| || || || | ||| | |||||| || ||||||||||| ||
Sbjct 258760 AGTTCCAGGGGGTCCAGAGAGAATGGCACCACGCGGAATCTTGGCACC 258807
>seq790
Length=831417
Score = 82.4 bits (90), Expect = 9e-11
Identities = 210/315 (67%), Gaps = 10/315 (3%)
Strand=Plus/Plus
Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077
||||| |||||| ||||| | ||| || | |||| |||||||| |||||
Sbjct 690816 GCATCTGAACCACCGGCAAGACGGGAACCGAAGTTGCCACTGGGCTCAAGGCAGTTGATG 690875
Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGC--GAGAGAGACT 176134
||||| ||||| | | ||| | ||| | | |||| | ||| | ||| ||||||
Sbjct 690876 TTGTTGGAACCGACGAAGTTTTGCGCGAG---GCCAATGATTGTCTGTTGGAGGGAGACT 690932
Query 176135 TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCAC--TTTCA 176192
||||| |||||||||| ||| ||| | |||| | | ||||||| || ||| |
Sbjct 690933 TCACCATGGTGGTACGATGTCTGCTCGGAGACATAACCAGCCAACTCAATAACCTTTTGA 690992
Query 176193 TCTCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGA 176252
||| | | | ||| | | |||||| |||||||| ||||| || || |||||| |
Sbjct 690993 TCT--TTGGTCAAGTTCCTCTTGAAACAGGCGTACATGACCTTACGCTGACCAGGCTTCA 691050
Query 176253 GACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGT 176312
| || || | | || |||||| ||| | || |||| |||||| | ||| |
Sbjct 691051 GTCCGTCTACAACAGATGGGATAGATCGCATGTTATCGGCCATACTGAAAAGAATGAGTT 691110
Query 176313 CCTTGTGTACAAAGT 176327
|||||| |||||||
Sbjct 691111 CCTTGTTGACAAAGT 691125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620730264486080
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