Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq211 168 8e-37 seq1201 127 3e-24 seq2 84.2 3e-11 seq790 82.4 9e-11 >seq211 Length=153984 Score = 168 bits (186), Expect = 8e-37 Identities = 914/1438 (64%), Gaps = 41/1438 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| ||||||| || || | || ||| || || ||| |||| || Sbjct 109772 CCACAGCACATGATCATGCGCGTTGCCGTTGGCATCTGGGGCGACGATGTTGAGCGCGTC 109713 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTA-TG-TTCATCCACGCAACACCAACCCTCT 111729 | ||||||||| || |||||| | | | || |||| |||||| | || || | | Sbjct 109712 ATTGAGACATACAACTTGATGTC--GAGCAAGTGCTTCACCCACGCTTCGCCCACATTGT 109655 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| ||||| || | || |||| || || || | | | ||||| | Sbjct 109654 TCAACGCCGGTACTCCCCAGGCACAGCTGTCGTCCTGCTTTCTCGTCGACATGAAGGAAG 109595 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || || | ||||| |||| |||||| | || ||| || ||||| ||| | Sbjct 109594 ACTCTATTGAGGGCATCTACGACACTCTGAAGACCTGCGCCATGATATCAAAAATGGCCG 109535 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTAC 111907 | || || || | | |||| || | |||| | ||| || | | || || Sbjct 109534 GCGGCATTGGTCTAAATGTCCACCGCATCCGTGCCACT--GGCTCCTACATCGCCGGCAC 109477 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 ||||| || | ||| ||| || ||||| ||||| || ||| ||| || ||||| Sbjct 109476 CAATGGCACCTCCAACGGTGTTACCCCTATGCTCCGCGTCTTCAACAACACCGCCCGCTA 109417 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 ||| |||| | ||| ||| | | || | | || |||| || ||||| || Sbjct 109416 TGTCGACCAGGGTGGCAACAAGCGCCCC---GGTGCCTTTGCCATCTACCTCGAGCCCTG 109360 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 ||| || || || | ||||| | || | || ||||| || | ||||||| || Sbjct 109359 GCATGCCGACGTCTTCGAGTTTTTGGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCG 109300 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 ||| || || ||| ||| || ||||| || ||||||||||||||| |||| ||| | Sbjct 109299 TGCCCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTCTTCATGAAGCGAGTGGAGAA 109240 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGG 112200 || || | ||| | || | ||||| || || || ||||| |||| ||| ||| Sbjct 109239 GAACGGTGACTGGACACTGATGTGTCCCAACGAGTGCCCGGGTCTTGCCGACTGCTATGG 109180 Query 112201 GTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG---GAAGAAA---GTCGGGCGACTG 112254 ||||| || |||||| | ||| ||||||||| |||| | |||| ||| Sbjct 109179 C-GAGGAATTCGAAGCCTTGTACGAGAAGTACGAGCGCGAAGGCAAGGGTCGAAAGACCA 109121 Query 112255 CGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 112314 || || |||| || | ||| | || |||||| || | || || ||||| || | Sbjct 109120 TGAAGGC-CCAGAAGC-----TCTGGTATGCCATTCTCGAGGCCCAGACTGAGACCGGCA 109067 Query 112315 CACCATATATGCTTTACAAAGACGCCTGT-AACCAAAAGAGTAATCAAAAGAATTTGGGT 112373 || | ||||| ||||| || | || |||| ||||| || || |||||| | || Sbjct 109066 ACCCTTTCATGCTCTACAAGGAT-CATGCCAACCGCAAGAGCAACCAGAAGAATCTCGGC 109008 Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433 || || |||||||| || || |||||| | || | | | | || ||| Sbjct 109007 ACCATTCGAAGCTCCAACCTTTGCACGGAAATCATTGAGTACTCGGCCCCTGACGAGGTC 108948 Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGAC 112492 || || || ||| | || || | |||||||| | ||| | | ||| ||| | | Sbjct 108947 GCCGTCTGCAACTTGGCGTCCCTTGCTCTCCCTTCTTTCGTGAACTACAGCGACGGAATC 108888 Query 112493 ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGT 112552 | ||| | | || || ||||| || || | ||| ||||| || || | Sbjct 108887 -TATGACTTCCAGAAGCTACACGATGTCACCCAGGTTGTTGTTCGCAACCTGAATAGGAT 108829 Query 112553 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612 || || || || ||||| | ||||| || || ||| | || || || Sbjct 108828 CATCGACGTCAACCACTATCCCGTCCCGGAGGCTCGCAACAGCAACATGCGCCATCGGCC 108769 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTG 112671 ||||| ||||||||||| ||||| || |||| |||| | ||||| || | | || | Sbjct 108768 CATTGGCCTCGGTGTCCAGGGTCTTGCTGATGCATTCTTGGCTTTG-CGACTGCCGTTCG 108710 Query 112672 ATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 | || || || ||| | || | || || ||||| || || ||||| |||| Sbjct 108709 AGTCGCCTGAGGCTCGTGAACTGAACAAGAAGATCTTCGAGACCATCTACCACGCTGCTC 108650 Query 112732 TTG--AGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789 | | | ||| | || | || ||| || || | ||| | | ||| || || Sbjct 108649 TCACCATGTCAGTGC--AGCTAGCCAAGGAGGAGGGCACCTATTCGTCTTATGAAGGCTC 108592 Query 112790 TCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTA 112849 |||| ||||| || || ||||||| ||| ||||||| || || || | || Sbjct 108591 CCCAGTCTCACAGGGCGTCCTTCAATATGACATGTGGGGAGTCAAGCCCTCCGACCTCTG 108532 Query 112850 CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 112909 |||||||| |||||||||||| |||||| || | ||| | |||||||| | | | Sbjct 108531 GGACTGGGATTCTCTCAAGGAACAGATCAAGCAGCATGGTGTGCGTAACAGCTTGCTCGT 108472 Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969 || || |||||||| ||| || | || || |||| || || ||||||||||| || Sbjct 108471 CGCCCCCATGCCAACCGCCAGTACTTCCCAGATTCTGGGCAACAACGAATGCTTTGAGCC 108412 Query 112970 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 ||||| | |||||||| | | | | | | || || |||||| | |||||||| Sbjct 108411 TTACACCTCCAACATCTACCAGCGTCGCGTCTTGGCTGGTGAGTTTCAGGTTGTCAAC 108354 >seq1201 Length=295393 Score = 127 bits (140), Expect = 3e-24 Identities = 201/287 (70%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| || |||||||| ||| || | | ||||| | |||||| | Sbjct 156785 CTCATCGACACCTACATTAAGGAGCCTGCCCAGCGTACCTATCTCTTCAACGCCATCGAC 156726 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAG 102164 || | || || || | ||||| || || ||||| || ||| | || |||||| Sbjct 156725 ACCATCCCCTGCATCCGTAAGAAGGCTGACTGGGCCTTGCGCTGGATCACGGACACAAAG 156666 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || |||| || |||| ||| | || ||||| || ||||| ||||||||| Sbjct 156665 TCCA---CCTTCGCCCAGCGCCTCGTTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGC 156609 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 ||| | ||| | | || | |||||||||||||| ||||||||||| ||||| |||| Sbjct 156608 GGTGCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTAACCTTC 156549 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| ||||| ||||| ||||| |||||| || ||||| Sbjct 156548 TCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGC 156502 >seq2 Length=655221 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/228 (69%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 16123 |||||| || || |||||||||| |||||| || || | ||||| | ||||| Sbjct 258583 GGCATCGATTTCGTCAATGAAGATGATGCAGGGCGCGTTCTTACGAGCCGTGGCGAAGAG 258642 Query 16124 ATCCCGTACACGCTTGGCG--CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA- 16180 || || ||| || | | || ||||| || |||||||| ||||| | | | |||| Sbjct 258643 GTCGCG--CACTCTGGAAGGACCGACACCGACGAACATCTCGACAAACTCAGAGCCGGAG 258700 Query 16181 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 || || | |||||| || ||| || || || |||| ||| ||||| |||||||| Sbjct 258701 ACGCTGAA-GAAGGGAACGCCAGACTCGCCTGCCGTGGCCTTGGCCAGAAGCGTCTTACC 258759 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || || || || | ||| | |||||| || ||||||||||| || Sbjct 258760 AGTTCCAGGGGGTCCAGAGAGAATGGCACCACGCGGAATCTTGGCACC 258807 >seq790 Length=831417 Score = 82.4 bits (90), Expect = 9e-11 Identities = 210/315 (67%), Gaps = 10/315 (3%) Strand=Plus/Plus Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 ||||| |||||| ||||| | ||| || | |||| |||||||| ||||| Sbjct 690816 GCATCTGAACCACCGGCAAGACGGGAACCGAAGTTGCCACTGGGCTCAAGGCAGTTGATG 690875 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGT-GTCCGC--GAGAGAGACT 176134 ||||| ||||| | | ||| | ||| | | |||| | ||| | ||| |||||| Sbjct 690876 TTGTTGGAACCGACGAAGTTTTGCGCGAG---GCCAATGATTGTCTGTTGGAGGGAGACT 690932 Query 176135 TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCAC--TTTCA 176192 ||||| |||||||||| ||| ||| | |||| | | ||||||| || ||| | Sbjct 690933 TCACCATGGTGGTACGATGTCTGCTCGGAGACATAACCAGCCAACTCAATAACCTTTTGA 690992 Query 176193 TCTCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGA 176252 ||| | | | ||| | | |||||| |||||||| ||||| || || |||||| | Sbjct 690993 TCT--TTGGTCAAGTTCCTCTTGAAACAGGCGTACATGACCTTACGCTGACCAGGCTTCA 691050 Query 176253 GACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGT 176312 | || || | | || |||||| ||| | || |||| |||||| | ||| | Sbjct 691051 GTCCGTCTACAACAGATGGGATAGATCGCATGTTATCGGCCATACTGAAAAGAATGAGTT 691110 Query 176313 CCTTGTGTACAAAGT 176327 |||||| ||||||| Sbjct 691111 CCTTGTTGACAAAGT 691125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620730264486080