Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq211 194 2e-44 seq2 132 6e-26 >seq211 Length=153984 Score = 194 bits (214), Expect = 2e-44 Identities = 695/1070 (65%), Gaps = 25/1070 (2%) Strand=Plus/Plus Query 110102 CATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAG 110161 |||| || |||||||| |||||||| |||||||| ||||| |||||| | |||| Sbjct 108737 CATCAGCAAGACCCTGGACACCGAGGCCAATGGGCCGATGGCGCATGTTGCTGTTGCGAG 108796 Query 110162 CAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCT 110221 | ||||| || |||| |||||||| || ||| || || ||| || Sbjct 108797 CCTCCGGGACGGGATAGTGGTTGACGTCGATGATCCTATTCAGGTTGCGAACAACAACCT 108856 Query 110222 TCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTG 110280 |||| || || || || | | | || | | || |||| | || || || | Sbjct 108857 GGGTGACATCGTGTAGCTTCTGGAAGTCATA-GATTCCGTCGCTGTAGTTCACGAAAGAA 108915 Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 |||||||||| ||||| | ||||| || | |||||| | | | ||| || | Sbjct 108916 GGGAGAGCAAGGGACGCCAAGTTGCAGACGGCGACCTCGTCAGGGGCCGAGTACTCAATG 108975 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 |||||||| || | |||||| || |||| || | |||||||| || ||| | Sbjct 108976 ATTTCCGTGCAAAGGTTGGAGCTTCGAATGGTGCCGAGATTCTTCTGGTTGCTCTTGCGG 109035 Query 110401 TTG-CATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAAT 110459 ||| |||| |||||| ||||||||| | ||| | || || || ||||| | || |||||| Sbjct 109036 TTGGCATG-ATCCTTGTAGAGCATGAAAGGGTTGCCGGTCTCAGTCTGGGCCTCGAGAAT 109094 Query 110460 GGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAG--CGAGACCTTCCTCCTCGTA 110516 ||| | ||| | | || | ||| | || | || | | ||||| |||||| Sbjct 109095 GGCATACCAGAGCTTCTG-GGCCTTCATGGT--CTTTCGACCCTTGCCTTCGCGCTCGTA 109151 Query 110517 CTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTC 110576 ||| ||||||| | || ||||||| || || || | ||||||| || || Sbjct 109152 CTTCTCGTACAAGGCTTCGAATTCCTCGCCATAGCAGTCGGCAAGACCCGGGCACTCGTT 109211 Query 110577 GGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAAT 110636 |||||| | || | ||| | || || ||| || | ||||||||| || ||||| || Sbjct 109212 GGGACACATCAGTGTCCAGTCACCGTTCTTCTCCACTCGCTTCATGAAGAGATCAGGGAT 109271 Query 110637 CCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAG 110696 ||| | || ||||||||||||| ||| |||| || | || ||||| ||| || Sbjct 109272 CCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAG 109331 Query 110697 CTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC--- 110753 |||||||| || | || || | ||||| || ||||| |||| || | || || Sbjct 109332 GTCCAAAAACTCGAAGACGTCGGCATGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGG 109391 Query 110754 ---CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCAT 110810 ||| | | || |||||| |||||||| || ||| |||||||| | |||||| Sbjct 109392 GCGCTT--GTTG-CCACCCTGGTCGACATAGCGGGCGGTGTTGTTGAAGACGCGGAGCAT 109448 Query 110811 AGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAAT 110870 ||| ||| || | ||| ||||| || || || ||| | ||||||| || Sbjct 109449 AGGGGTAACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGAT 109508 Query 110871 GTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGA 110929 | ||||| || | |||||| || || ||| || || || || ||| | | Sbjct 109509 GCGGTGGACATTTAGACCAATGCCGCCGGCCATTTTTGATATCATGGCGCAGGTCT-TCA 109567 Query 110930 GTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACA 110989 | || | || || || ||||| || ||| |||| || | | |||||||| || |||| Sbjct 109568 GAGTGTCGTAGATGCCCTCAATAGAGTCTTCCTTCATGTCGACGAGAAAGCAGGACGACA 109627 Query 110990 TCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTT 111049 ||| | | || || || || ||||| | ||| || | || || ||| || ||| Sbjct 109628 GCTGTGCCTGGGGAGTACCGGCGTTGAACAATGTGGGCGAAGCGTGGGTGA--AGCACTT 109685 Query 111050 G--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAAT 111107 | |||||| ||||||||| || | || ||||| | || || |||| Sbjct 109686 GCTCGACATCAAGTTGTATGTCTCAATGACGCGCTCAACATCGTCGCCCCAGATGCCAAC 109745 Query 111108 GGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAA 111157 |||||| ||||||| ||| | || || | ||| | ||| ||||||| Sbjct 109746 GGCAACGCGCATGATCATGTGCTGTGGTCTCTCGGCAATCTTGCCATCAA 109795 >seq2 Length=655221 Score = 132 bits (146), Expect = 6e-26 Identities = 338/506 (67%), Gaps = 24/506 (5%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || || | ||||| | ||||| |||||| | | ||| ||| |||| Sbjct 258401 TCGAAACGGCCAGGACGCATCAGAGCCTTGTCAAGGATATCGGCTCTGTTGGTACCGGCG 258460 Query 11566 ATGACTACAATGCCAGT--CTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGA 11623 | || |||| || | || | ||| |||||||||||| || ||||| | |||||||| Sbjct 258461 AGAACGACAA--CCTGCTCCTGAGTGTTGAAACCGTCCATCTCGGTGAGGATCTGGTTGA 258518 Query 11624 TCGTCTGTTCACGCTCATCGTTGGA-------GGGCA--TACCA-CCTGCCGAACGCTTC 11673 || || ||||| |||||| |||| | || |||| | ||| Sbjct 258519 GGGTAGCCTCGCGCTCGTCGTTGCTACCGCCCGGGCGGTTGCCGTCCTGTCTCGCGCG-- 258576 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 ||| | || || || || || ||||| | ||| || || ||| ||| ||| Sbjct 258577 --ACCAATGGCATCGATTTCGTCAATGAAGATGATGCAGGGCGCGTTCTTACGAGCCGTG 258634 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 |||| || || || || | | || ||||| ||||||||||| || || | | | Sbjct 258635 GCGAAGAGGTCGCGCACTCTGGAAGGACCGACACCGACGAACATCTCGACAAACTCAGAG 258694 Query 11794 GCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 | || || ||||| ||||||||| |||||| || || |||| || || || || Sbjct 258695 CCGGAGACGCTGAA-GAAGGGAACGCCAGACTCGCCTGCCGTGGCCTTGGCCAGAAGCGT 258753 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTT 11910 |||||| || ||||| | |||| ||||| ||| ||||| || ||||||||||| || | Sbjct 258754 CTTACCAGTTCCAGGGGGTCCAGAGAGAATGGCACCACGCGGAATCTTGGCACCTAACCT 258813 Query 11911 CCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCG 11970 | | ||||||| || |||| | |||| |||| |||| || ||| |||||| Sbjct 258814 C--TCGAAGCGCTCTGGGGTCTTCAAGAAGCTGACAAACTCCATAATCTCCGTCTTGGCC 258871 Query 11971 GAGTCGATACCCTCAACATCGGTGAA 11996 ||| || || | |||||| |||| Sbjct 258872 TCGTCCATGCCGGCCACATCGTTGAA 258897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588964485519200