Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq211 158 1e-33 seq1201 147 3e-30 >seq211 Length=153984 Score = 158 bits (174), Expect = 1e-33 Identities = 965/1508 (64%), Gaps = 49/1508 (3%) Strand=Plus/Plus Query 105895 GTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGG 105954 |||||||| | |||||| || || | | | | | | |||||||| | ||||| || Sbjct 108354 GTTGACAACCTGAAACTCACCAGCCAAGACGCGACGCTGGTAGATGTTGGAGGTGTAAGG 108413 Query 105955 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 106014 ||||||||||| || || |||| || || | || ||| |||||||| || || | Sbjct 108414 CTCAAAGCATTCGTTGTTGCCCAGAATCTGGGAAGTACTGGCGGTTGGCATGGGGGCGAC 108473 Query 106015 CAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA 106074 | | |||||||| | ||| | | |||||| ||||||||||| ||||||||| | Sbjct 108474 GAGCAAGCTGTTACGCACACCATGCTGCTTGATCTGTTCCTTGAGAGAATCCCAGTCCCA 108533 Query 106075 GTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCT-TGGGACGTGGG 106131 | | | || || || | ||||||| ||| ||||||| || |||| || ||| ||| Sbjct 108534 GAGGTCGGAGGGCTTGAC-TCCCCACATGTCATATTGAAGGACGCCCTGTGAGACTGGGG 108592 Query 106132 AGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCA 106190 || || ||| | | | ||||| || | | | || | | ||| | | | Sbjct 108593 AG--CCTTCATAAGACGAATAGGTGCCCTCCTCCTTGGCTAGCTGCACTGACATGGTG-A 108649 Query 106191 GGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT 106250 | | ||||| || ||||| || ||||| |||| || || ||| || | Sbjct 108650 GAGCAGCGTGGTAGATGGTCTCGAAGATCTTCTTGTTCAGTTCACGAGCCTCAGGCGACT 108709 Query 106251 CAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACCTTGAACACCCAAACCAATA 106309 | || | | || ||| | | ||| |||| || ||||| || ||||| | ||||| Sbjct 108710 CGAACG-GCAGTCGCAAAGCCAAGAATGCATCAGCAAGACCCTGGACACCGAGGCCAATG 108768 Query 106310 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCA 106366 || | || ||||| || || | ||| || ||| |||||||| || ||| Sbjct 108769 GGCCGATGGCGCATGTTG--CTGTTGCG-AGCCTCCGGGACGGGATAGTGGTTGACGTCG 108825 Query 106367 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 106426 |||| | || || || ||||| || |||| || || || || | | ||| Sbjct 108826 ATGATCCTATTCAGGTTGCGAACAACAACCTGGGTGACATCGTGTAGCTTCTGGAAGTCA 108885 Query 106427 AAAGTGCGAGTCTCTTCA-TTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 106485 | | | ||| || | || || | || || || | || ||||| ||||| || Sbjct 108886 TAGATTCC-GTCGCTGTAGTTCACGAAAGAAGGGAGAGCAAGGGACGCCAAGTTGCAGAC 108944 Query 106486 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAAT 106545 || ||| || | | |||||| | ||||| || || | |||||| || ||| Sbjct 108945 GGCGACCTCGTCAGGGGCCGAGTACTCAATGATTTCCGTGCAAAGGTTGGAGCTTCGAAT 109004 Query 106546 CGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTG-CACGCATCCTTGTAGAGCATGTAGG 106604 || || | |||||| ||||| ||||| |||| || | |||||||||||||||| | | Sbjct 109005 GGTGCCGAGATTCTTCTGGTTGCTCTTGCGGTTGGCATG-ATCCTTGTAGAGCATGAAAG 109063 Query 106605 GCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACA 106663 | | || ||||| ||||| | || |||||| || | ||| | | || | ||| | || Sbjct 109064 GGTTGCCGGTCTCAGTCTGGGCCTCGAGAATGGCATACCAGAGCTTCTG-GGC--CTTCA 109120 Query 106664 ATGGCGTT-GGCCCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 106721 | | || | ||| | ||| ||| ||||||||| ||| | |||||| || ||||| Sbjct 109121 TGGTCTTTCGACCCTTGCCTTCGCGCTCGTACTTCTCGTACAAGGCTTCGAATTCCTC-G 109179 Query 106722 CCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCC 106780 ||| || ||||| ||||| || || || ||||| | || | ||| | ||| | Sbjct 109180 CCATAGCAGTCGGCAAGACCCGGGCACTCGTTGGGACACATCAGTGTCCAGTCACCGTTC 109239 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTC-TA 106837 | ||| || ||||||||||| || || || ||||| ||| || |||| || || | Sbjct 109240 TTCTCCACTCGCTTCATGAAGAGATCAGGGATCCAAAGGGCGAGGAAA--AGGTCACGGG 109297 Query 106838 CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCG 106897 ||| || |||| || | || ||||| || | || | ||||| | || || || Sbjct 109298 CACGGA-CCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCCAAAAACTCGAAGACGTCGGCA 109356 Query 106898 TGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTAC 106953 ||||| ||||| || |||| || | | || | | | | ||| | || | || Sbjct 109357 TGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTG-CCACCCTGGTCGAC 109415 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 |||||| || ||| ||| || ||||| ||||| || ||| ||| | || ||||| Sbjct 109416 ATAGCGGGCGGTGTTGTTGAAGACGCGGAGCATAGGGGTAACACCGTTGGAGGTGCCATT 109475 Query 107014 TGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || ||| || ||| | |||| | | |||| | | ||||| || Sbjct 109476 GGTGCCGGCGATGTAGGAG--CCAGTGGCACGGATGCGGTGGACATTTAGACCAATGCCG 109533 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 || ||| ||||| || || || | | ||||| | ||||| || | || ||| Sbjct 109534 CCGGCCATTTTTGATATCATGGCGCAGGTCTTCAGAGTGTCGTAGATGCCCTCAATAGAG 109593 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 || ||||| || ||| || ||||| |||| ||| | || ||||| || ||| Sbjct 109594 TCTTCCTTCATGTCGACGAGAAAGCAGGACGACAGCTGTGCCTGGGGAGTACCGGCGTTG 109653 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAA-CATACCTTG--GGACATCTTGTCGTATGTCTCC 107248 || | || || | ||||| |||| || |||| |||||| || ||||||||| Sbjct 109654 AACAATGTGGGCGAAGCGTGGGTGAAGCA---CTTGCTCGACATCAAGTTGTATGTCTCA 109710 Query 107249 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGG 107308 | ||| |||| || || || |||||| | ||| || ||||| | ||||| || Sbjct 109711 ATGACGCGCTCAACATCGTCGCCCCAGATGCCAACGGCAACGCGCATGATCATGTGCTGT 109770 Query 107309 GGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGA 107368 ||| | || | ||||||| ||| |||||||| |||| | ||| || | Sbjct 109771 GGTCTCTCGGCAATCTTGCCATCAAGCTTGAGAAGATAGGATCTCTCCAAGGTCTTAAAG 109830 Query 107369 CCAAAGTA 107376 || ||||| Sbjct 109831 CCGAAGTA 109838 >seq1201 Length=295393 Score = 147 bits (162), Expect = 3e-30 Identities = 354/527 (67%), Gaps = 19/527 (4%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||||||||||||||| ||||| || || || || |||||| ||| || Sbjct 156501 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAGAAGGTTAGACC 156560 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | | ||| | ||| ||||||||| Sbjct 156561 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGAT 156620 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC--- 117449 ||||| || ||||| |||| ||||||| |||||||| | ||||||||||| Sbjct 156621 GCCCTCGACGGCGGCAAAGGCAACGAGGCGCTGGGCGAAGGTG---GACTTTGTGTCCGT 156677 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TT 117508 | ||| || ||||| | |||||||| || || || | || | |||||| || Sbjct 156678 GATCCAGCGCAAGGCCCAGTCAGCCTTCTTACGGATGCAGGGGATGGTGTCGATGGCGTT 156737 Query 117509 CAA---ATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAAT 117565 || ||| | | || ||| ||||||||||| |||| || | || | Sbjct 156738 GAAGAGATAGGTAC-GCTGGGCAG---GCTCCTTAATGTAGGTGTCGATGAGAAGGGAGT 156793 Query 117566 ATGTTTCGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCG 117624 | || ||| |||| | | ||| ||| | || | ||||||| ||||||| ||| Sbjct 156794 AAGTCTCGGAGTGAATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCAGCGCGCCTCG 156852 Query 117625 CTTATCTGCACTTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGAC 117684 | ||| ||||| | | ||| | | | |||||| || || || ||||| Sbjct 156853 GGGACCTGGACTTCGCCAGAGAAACGCTCAACCAGGTTCTCATTGACGATGCCGTCGGAA 156912 Query 117685 CCAGCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCAT---TCAGGGTC 117741 | || ||||| || || |||| ||||| | ||| |||| || | || | | Sbjct 156913 GCGGCGAAGAAGGCGAGAATGTGAGAGATGAAGTACTTCTCATCATCGTTGATCTTGTTG 156972 Query 117742 TTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 |||||||||| ||||| ||||||||||||| || || |||||||| Sbjct 156973 TTCCAGTCGTGGAGATCCTTGGACAAATCAATCTCCTCAGCAGTCCA 157019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589969265875360