Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq456 93.3 5e-14 >seq456 Length=562 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| ||| ||| || |||| || ||||| || || || ||| | || ||| | | Sbjct 291 TTCTTGACCATGCTGAAGAAGTTGGAATTGATCTCCCTTACTCATGCAGAGCTGGTTCTT 350 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 |||| |||||||||||| ||| | ||| || ||||| || || ||||||| Sbjct 351 GTTCTTCATGTGCTGGTAAAGTTGTTGGGGGTGAAGTTGATCAATCTGATGGTTCTTTCC 410 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTA 172080 |||||||||| || || || | || || ||||| || |||||||||||||||| Sbjct 411 TTGATGATGACCAGATTGAAGGTGGTTTTGTTCTTACTTGTGTTGCTTATCCTA 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610384866742560