Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq428 149 1e-30
seq1544 147 5e-30
seq442 129 1e-24
seq643 125 2e-23
seq632 104 5e-17
>seq428
Length=571
Score = 149 bits (164), Expect = 1e-30
Identities = 165/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|| || | |||||| |||||||| || || || || |||||||||||||| | || |
Sbjct 348 AGCCTGAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGT 407
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||||||||| ||||| || | || || || || ||||| || ||||||
Sbjct 408 CCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCT 467
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||||||||| || |||||| || || |||||||| || || || || |||||
Sbjct 468 TTGTCTTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTG 527
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
| || || || || | ||||| ||||| | |||||||
Sbjct 528 ATGGTTTTCCCGGTTAGGGTTTTCACGAAAATCTGCATTT 567
>seq1544
Length=892
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| || ||||| || || ||||||||||| |||||||| || || |||||
Sbjct 171 ACAAGGTGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCC 230
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| || ||||| | | || || || |||||||| || || || || ||
Sbjct 231 AGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCCTGG 290
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| ||||| ||||||||||| || || || || || ||||||| || ||
Sbjct 291 ATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAGTTTTA 350
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||| || || || | |||||
Sbjct 351 CCGGTAAGAGTCTTCACAAAGATCTGCAT 379
Score = 118 bits (130), Expect = 2e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
||| |||||||||||||| || || || || || ||||| || || | ||| || |||||
Sbjct 395 CAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTTCCATC 454
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||||||||||| || || ||||| | | || || || ||||| || ||||| || ||
Sbjct 455 CTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTTATC 514
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
|| || || ||| ||||| || ||||| || ||||| || || || ||||| | ||
Sbjct 515 CTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAACCTCGAGGGTGATGGT 574
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || || | || || || || | |||||
Sbjct 575 TTTCCCGGTGAGCGTCTTAACAAAGATCTGCAT 607
>seq442
Length=625744
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || || ||||| || ||||| ||||| |||| || || | || || || |||||
Sbjct 417212 GTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTG 417271
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| || |||||||| || || ||||| || || ||||| || ||||| || || ||
Sbjct 417272 CTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 417331
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||||||| || || ||||| || ||||| || | ||||| |||||| || ||
Sbjct 417332 GGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCTTGCCGGT 417391
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|| || || ||||| | |||||
Sbjct 417392 CAGGGTCTTCACGAAAATCTGCAT 417415
Score = 116 bits (128), Expect = 8e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| || ||||| || ||||| ||||| |||| || || | || || ||||||||
Sbjct 417440 GTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCGAGCTG 417499
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || || || ||||| || |||||||| || || || || || ||
Sbjct 417500 CTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTT 417559
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||||||| || || ||||| | ||||| || ||||| | ||||| || ||
Sbjct 417560 GGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTGCCAGT 417619
Query 195117 CAAAGTTTTTAC 195128
| ||| || ||
Sbjct 417620 GAGAGTCTTGAC 417631
>seq643
Length=80414
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||| ||| || || || ||||| |||| || || | || || |||
Sbjct 65252 ACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 65311
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || || || ||||| || || ||||| || ||||| ||
Sbjct 65312 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 65371
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| ||| ||||| |||||||| | |||||
Sbjct 65372 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 65431
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTG 195153
|| || | || || ||||| | ||||| || ||||||
Sbjct 65432 CCCGTGAGGGTCTTGACGAAGATCTGCATGATTGCCTACTTG 65473
>seq632
Length=500
Score = 104 bits (114), Expect = 5e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| || ||||| || || || ||||| |||| | ||||| ||||||||
Sbjct 231 ACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCTTCC 172
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| ||| ||||| || ||||| | || |||||||| || ||||| ||||||||||| |||
Sbjct 171 AACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGA 112
Query 195052 ATTTT 195056
|| ||
Sbjct 111 ATCTT 107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109459367375588
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |