Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq632 98.7 6e-16 seq643 95.1 8e-15 seq442 89.7 3e-13 seq1544 87.8 1e-12 >seq632 Length=500 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | ||| |||| |||| |||||| || ||||| Sbjct 213 TCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCTTCCAACTGTTTACCAGCAAAG 154 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || || ||||| | || | || || ||||| |||||| ||| || | Sbjct 153 ATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTT 94 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | |||| || |||||| || | || || ||||| |||||||| ||||| || Sbjct 93 TCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTTGCCCGTGAGGGTCTTGACG 34 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 33 AAGATCTGCATA 22 >seq643 Length=80414 Score = 95.1 bits (104), Expect = 8e-15 Identities = 143/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| || ||| | || | || || ||||| |||||| Sbjct 65264 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 65323 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || || || |||||||| | || | ||||||||||| ||||| ||| Sbjct 65324 GCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 65383 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| || | ||| || || | ||| || || || |||||||| Sbjct 65384 AC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTGAG 65439 Query 34961 AGTCTTCACAAAGATCTGCAT 34981 ||||| || ||||||||||| Sbjct 65440 GGTCTTGACGAAGATCTGCAT 65460 >seq442 Length=625744 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||||||||| ||||| || ||| | || | || || Sbjct 417435 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCG 417494 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| | || | |||||||| || Sbjct 417495 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGG 417554 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | | ||| || |||| ||| ||||| || Sbjct 417555 ATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGACTCCACCTCGAGGGTGATGGTCTTG 417614 Query 34953 CCCGTGAGAGTCTTCACAA 34971 || ||||||||||| |||| Sbjct 417615 CCAGTGAGAGTCTTGACAA 417633 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||||||||| ||||| || ||| | || | || || Sbjct 417207 ACCAAGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 417266 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || || |||||||| | || | ||||||||||| Sbjct 417267 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 417326 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | ||| || || | ||| || || || Sbjct 417327 ATCTTGGACTTGACGTTGTCGATTGTGTCTGACGACTCCACCTCTAAGGTAATCGTCTTG 417386 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || |||||||| || ||||||||| Sbjct 417387 CCGGTCAGGGTCTTCACGAAAATCTGCATA 417416 >seq1544 Length=892 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCA 34826 ||| || | ||||| || ||| ||||| ||||| ||||| | |||| | | | || Sbjct 395 CAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCT--TCCA 452 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| ||||||||||| || | | ||||| || | || | || ||||| Sbjct 453 TCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCCTTA 512 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || ||||| || ||| | || | ||| |||||| |||| ||| ||| Sbjct 513 TCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCAACCTCGAGGGTGATG 572 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||| ||||| ||||||||||||||| Sbjct 573 GTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCATA 608 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | ||| | || | || || |||||||||||||| || Sbjct 644 TTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGACCGTCCTCGAGCTGTTTTCCGGCGAA 703 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | || |||||||| ||||| |||||| Sbjct 704 GATCAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 763 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| ||| || |||| || ||||| ||||| || || || || || Sbjct 764 GTCGATGGTGTCAGAACTCTCGACCTCGAGAGTGATGGTCTTTCCGGTCAGGGTTTTAAC 823 Query 34970 AAAGATCTGCATATT 34984 || || ||||| || Sbjct 824 GAATATTTGCATCTT 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324627412077792