Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq235 196 4e-44 seq1544 116 3e-20 seq632 105 5e-17 seq428 95.1 1e-13 >seq235 Length=668 Score = 196 bits (216), Expect = 4e-44 Identities = 391/576 (68%), Gaps = 10/576 (2%) Strand=Plus/Minus Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966 || ||||| ||||| |||||||| ||| || | | ||| | |||| | | | | | Sbjct 571 CTGAGAACGGCTTGTGAAAGAGCAAAAAGAACATTATCAAGTAGTACAGAGGCGAGTGTA 512 Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026 ||| |||| ||||| || ||||||| |||| |||| || | || || | |||| Sbjct 511 GAAATAGACTCATTGTTCGAGGGAACAGATTTCTATACAAAAATAACAAGAGCAAGATTT 452 Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGA 552086 ||||| || ||| ||| | |||||| |||| | |||||||||||| | | ||| | Sbjct 451 GAAGAAATGTGTGGTGACTTGTTTAGAGCAACATTAGAACCAGTAGAAAAGGCCTTACGT 392 Query 552087 GATTCAAAGATTGATAAATCCAAAGTAC--ATGAAATTGTGCTTGTTGGTGGATCTACAA 552144 ||| | || || |||||| | |||| |||| | || || || || || || |||| Sbjct 391 GATGCTAAAATGGATAAA--CGTAGTATTAATGAGGTCGTTCTGGTAGGAGGCTCCACAA 334 Query 552145 GAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204 | || || ||||| | ||||||| | | | | ||||| ||| | |||||| || Sbjct 333 GGATACCAAAAATACAGAAAATGTTGACAGAATTTATGAATGGAAAAGACTTAAATAAAT 274 Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264 || ||||| ||||| ||||| ||||||||||| || | || || |||||| | |||| Sbjct 273 CAGTAAATCCTGATGAAGCTGTGGCCTATGGTGCTGCTGTACAGGCTGCTATTTTATCTG 214 Query 552265 GACAAACTGATGAAAAACTACAAAATATTGTACTT---GTAGATGTTACTCCTCTATCTC 552321 | | || ||| | | | || | ||||||| |||||||| |||| | || | Sbjct 213 GTGACTCTAGTGACACAATTAAAGA---TGTACTTTTAGTAGATGTCGCTCCGTTGTCAC 157 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381 | || ||||||| | |||||| ||||||| || ||||| || || ||| ||| || | Sbjct 156 TCGGAATAGAAACTGCAGGAGGTGTTATGACCAAACTTATTGAGAGGAATTCTAAAATAC 97 Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441 | |||| || | |||| | || |||||||| ||||| | || || | |||| Sbjct 96 CAACTAAAGCTTCACAAACATTTACAACATATTCAGACAATCAGCCAGCAGTCAATATTC 37 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATA 552477 | | ||||| || || | | | |||||||||| Sbjct 36 AGGTATTTGAGGGGGAGCGTGTAATGACTAAAGATA 1 >seq1544 Length=892 Score = 116 bits (128), Expect = 3e-20 Identities = 164/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || ||||| |||||||| ||| | ||| |||||||||||||| ||| Sbjct 158 CCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGG--ATATTGTAATCAGCAAGA 215 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || ||| ||||| || || || || ||||| || | || |||||||| |||||||| Sbjct 216 GTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATA 275 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTC 563429 || || ||||| || || || || || ||||| || || | | | || || Sbjct 276 CCCTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGAC-CTC 334 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| |||| ||||||||| |||||||| || || || || |||||| Sbjct 335 GAGGGTAATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCATA 380 Score = 105 bits (116), Expect = 5e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| |||||||||||||| ||| || || ||||| ||||| ||||| | Sbjct 617 GAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACG 676 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 || || || ||||||||||| || || || | |||||| ||||| ||||||||||| Sbjct 677 ACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTC 736 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAG 563434 || || || || || || || || || || |||| | || ||||||| Sbjct 737 CTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGAC-CTCGAGAG 795 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || || || || ||||||||||| |||||||| Sbjct 796 TGATGGTCTTTCCGGTCAGGGTTTTAACGAATATTTGCAT 835 Score = 91.5 bits (100), Expect = 1e-12 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| | ||||| ||||| || ||| || || ||||| ||||| | ||| ||| Sbjct 390 AGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTT 449 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| || || || ||||||||||| || | || |||||||| ||||| |||||||| Sbjct 450 CCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCC 509 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG---TGTGAGTACATTCGAGA 563433 ||||| || || || || || || || ||||||| | | | || ||||| Sbjct 510 TTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCA--AC-CTCGAGG 566 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | ||||| || || || || ||||| || || |||||| Sbjct 567 GTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCATA 608 >seq632 Length=500 Score = 105 bits (116), Expect = 5e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || ||||||||||||||| || || || ||||| || | | ||||| Sbjct 241 GAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCT 182 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 |||||| | ||||| || ||||| || | ||| || || ||||| ||||||||||| Sbjct 181 GCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTC 122 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435 ||| || ||||| || ||| || || || |||||| || | | || ||||| Sbjct 121 TTTGTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGT 62 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATAG 563476 | ||||| || || || || || ||||| || ||||||| Sbjct 61 GATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATAG 21 >seq428 Length=571 Score = 95.1 bits (104), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 563262 GAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATC 563321 ||| ||||||||||| ||| ||| || ||||||||||| || | || | | ||| Sbjct 353 GAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATC 412 Query 563322 TTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 563381 |||||| || || || || ||||| | | |||||||| ||||| || |||||||| || Sbjct 413 TTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTC 472 Query 563382 TTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGTAACAG 563440 |||||| || || || || || || || || | || ||||| || | | Sbjct 473 TTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGAC-CTCGAGGGTGATGG 531 Query 563441 TTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || || ||||| |||||||| ||||| Sbjct 532 TTTTCCCGGTTAGGGTTTTCACGAAAATCTGCAT 565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029213288626360