Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020
17-06-09] 1,564 sequences; 57,603,470 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq235 196 4e-44
seq1544 116 3e-20
seq632 105 5e-17
seq428 95.1 1e-13
>seq235
Length=668
Score = 196 bits (216), Expect = 4e-44
Identities = 391/576 (68%), Gaps = 10/576 (2%)
Strand=Plus/Minus
Query 551907 CTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATT 551966
|| ||||| ||||| |||||||| ||| || | | ||| | |||| | | | | |
Sbjct 571 CTGAGAACGGCTTGTGAAAGAGCAAAAAGAACATTATCAAGTAGTACAGAGGCGAGTGTA 512
Query 551967 GAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTT 552026
||| |||| ||||| || ||||||| |||| |||| || | || || | ||||
Sbjct 511 GAAATAGACTCATTGTTCGAGGGAACAGATTTCTATACAAAAATAACAAGAGCAAGATTT 452
Query 552027 GAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGA 552086
||||| || ||| ||| | |||||| |||| | |||||||||||| | | ||| |
Sbjct 451 GAAGAAATGTGTGGTGACTTGTTTAGAGCAACATTAGAACCAGTAGAAAAGGCCTTACGT 392
Query 552087 GATTCAAAGATTGATAAATCCAAAGTAC--ATGAAATTGTGCTTGTTGGTGGATCTACAA 552144
||| | || || |||||| | |||| |||| | || || || || || || ||||
Sbjct 391 GATGCTAAAATGGATAAA--CGTAGTATTAATGAGGTCGTTCTGGTAGGAGGCTCCACAA 334
Query 552145 GAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAA 552204
| || || ||||| | ||||||| | | | | ||||| ||| | |||||| ||
Sbjct 333 GGATACCAAAAATACAGAAAATGTTGACAGAATTTATGAATGGAAAAGACTTAAATAAAT 274
Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264
|| ||||| ||||| ||||| ||||||||||| || | || || |||||| | ||||
Sbjct 273 CAGTAAATCCTGATGAAGCTGTGGCCTATGGTGCTGCTGTACAGGCTGCTATTTTATCTG 214
Query 552265 GACAAACTGATGAAAAACTACAAAATATTGTACTT---GTAGATGTTACTCCTCTATCTC 552321
| | || ||| | | | || | ||||||| |||||||| |||| | || |
Sbjct 213 GTGACTCTAGTGACACAATTAAAGA---TGTACTTTTAGTAGATGTCGCTCCGTTGTCAC 157
Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381
| || ||||||| | |||||| ||||||| || ||||| || || ||| ||| || |
Sbjct 156 TCGGAATAGAAACTGCAGGAGGTGTTATGACCAAACTTATTGAGAGGAATTCTAAAATAC 97
Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441
| |||| || | |||| | || |||||||| ||||| | || || | ||||
Sbjct 96 CAACTAAAGCTTCACAAACATTTACAACATATTCAGACAATCAGCCAGCAGTCAATATTC 37
Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATA 552477
| | ||||| || || | | | ||||||||||
Sbjct 36 AGGTATTTGAGGGGGAGCGTGTAATGACTAAAGATA 1
>seq1544
Length=892
Score = 116 bits (128), Expect = 3e-20
Identities = 164/226 (73%), Gaps = 6/226 (3%)
Strand=Plus/Plus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310
||| ||||| || ||||| |||||||| ||| | ||| |||||||||||||| |||
Sbjct 158 CCTCAGACGCAGCACAAGGTGAAGGGTCGACTCCTTCTGG--ATATTGTAATCAGCAAGA 215
Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370
|| ||| ||||| || || || || ||||| || | || |||||||| ||||||||
Sbjct 216 GTCCTTCCGTCTTCCAGCTGCTTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATA 275
Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTC 563429
|| || ||||| || || || || || ||||| || || | | | || ||
Sbjct 276 CCCTCCTTATCCTGGATCTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGAC-CTC 334
Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
||| |||| ||||||||| |||||||| || || || || ||||||
Sbjct 335 GAGGGTAATAGTTTTACCGGTAAGAGTCTTCACAAAGATCTGCATA 380
Score = 105 bits (116), Expect = 5e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315
||||||||| |||||||||||||| ||| || || ||||| ||||| ||||| |
Sbjct 617 GAGACGGAGGACAAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTACG 676
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
|| || || ||||||||||| || || || | |||||| ||||| |||||||||||
Sbjct 677 ACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGACGTTGCTGGTCAGGGGGAATTCCTTC 736
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAG 563434
|| || || || || || || || || || |||| | || |||||||
Sbjct 737 CTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCAGAACTCTCGAC-CTCGAGAG 795
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| | || || || || || ||||||||||| ||||||||
Sbjct 796 TGATGGTCTTTCCGGTCAGGGTTTTAACGAATATTTGCAT 835
Score = 91.5 bits (100), Expect = 1e-12
Identities = 155/222 (70%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
||||| | ||||| ||||| || ||| || || ||||| ||||| | ||| |||
Sbjct 390 AGACGCAACACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAAGTCCTT 449
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
||| || || || ||||||||||| || | || |||||||| ||||| ||||||||
Sbjct 450 CCATCCTCGAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGGATTCCTTCC 509
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG---TGTGAGTACATTCGAGA 563433
||||| || || || || || || || ||||||| | | | || |||||
Sbjct 510 TTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTATCAGAACTCTCA--AC-CTCGAGG 566
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| | ||||| || || || || ||||| || || ||||||
Sbjct 567 GTGATGGTTTTCCCGGTGAGCGTCTTAACAAAGATCTGCATA 608
>seq632
Length=500
Score = 105 bits (116), Expect = 5e-17
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315
|||||| || ||||||||||||||| || || || ||||| || | | |||||
Sbjct 241 GAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCT 182
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
|||||| | ||||| || ||||| || | ||| || || ||||| |||||||||||
Sbjct 181 GCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTC 122
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435
||| || ||||| || ||| || || || |||||| || | | || |||||
Sbjct 121 TTTGTCCTGAATCTTGGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGT 62
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATAG 563476
| ||||| || || || || || ||||| || |||||||
Sbjct 61 GATTGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATAG 21
>seq428
Length=571
Score = 95.1 bits (104), Expect = 1e-13
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 563262 GAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATC 563321
||| ||||||||||| ||| ||| || ||||||||||| || | || | | |||
Sbjct 353 GAGAACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATC 412
Query 563322 TTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 563381
|||||| || || || || ||||| | | |||||||| ||||| || |||||||| ||
Sbjct 413 TTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTC 472
Query 563382 TTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAGAGTAACAG 563440
|||||| || || || || || || || || | || ||||| || | |
Sbjct 473 TTGAATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGAC-CTCGAGGGTGATGG 531
Query 563441 TTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||| || || || ||||| |||||||| |||||
Sbjct 532 TTTTCCCGGTTAGGGTTTTCACGAAAATCTGCAT 565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029213288626360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |