Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1112 87.8 1e-12 >seq1112 Length=320824 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29741 CCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCT 29800 || |||| |||| ||| ||| | || ||| | ||||||| ||| ||||| || Sbjct 256382 CCTCCCTGTTGTTGATCTCCAGCATCGGGAAGTCCCGCGGCTCCCGCTCCAGCTGCACCT 256323 Query 29801 TCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCT 29859 | |||| |||||||| ||| ||| ||||| ||||| |||| | ||| | | || Sbjct 256322 TGAGCGCGTCCACGTGGTCCGCGTAAACGTGCGCGTCGCCCATGACGTGCGTGAGGCTG- 256264 Query 29860 CCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATG 29919 || || | || ||| || | || ||||||| || || || | |||||| || ||| Sbjct 256263 CCAGGAACCAGGTCGGACGCGCGCGCAATCATGTGTGTCAGCAGCGCGTAGCTCGCAATG 256204 Query 29920 TTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 29969 || || || || |||||||||||||| | || | |||||| || || || Sbjct 256203 TTGAACGGCACGCCGAGCCCCATGTCGCAGGAGCGCTGGTACAGTTGGCA 256154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408609811237772