Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20gloeosporioides_20[genbank_20GCA_5F002189585.1_2020 17-06-09] 1,564 sequences; 57,603,470 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq632 149 5e-31 seq428 131 1e-25 seq1544 114 1e-20 seq442 98.7 8e-16 >seq632 Length=500 Score = 149 bits (164), Expect = 5e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||||||||| || || || || ||||| |||| | |||||| |||| ||||| || Sbjct 226 ATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCTTCCAACTG 167 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||||| ||||| ||||| | |||||| || || ||||| |||||||| || ||||| || Sbjct 166 TTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCTTCTTTGTCCTGAATCTT 107 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| |||||| ||| ||| | || || |||||||||| |||||||| || Sbjct 106 GGCTTTAACATTTTCTATAGTATCACTGGGCTCAACCTCAAGAGTGATTGTTTTGCCCGT 47 Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472 | || || || || |||||||| || Sbjct 46 GAGGGTCTTGACGAAGATCTGCATAGT 20 >seq428 Length=571 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | |||||| |||||||| || || |||||||||||||| | || | |||| || Sbjct 356 AACAAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGTCCATCTTC 415 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | |||||||| || || ||||||||||| ||||| || || || |||||||| ||||| Sbjct 416 AAGCTGCTTACCAGCGAAAATCAAACGCTGCTGATCCGGAGGGATACCTTCTTTGTCTTG 475 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||| || || ||| | || | ||||| | || || || || |||| ||||| Sbjct 476 AATCTTGGTCTTGACATTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTTTT 535 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| ||||| || || |||||||| Sbjct 536 CCCGGTTAGGGTTTTCACGAAAATCTGCAT 565 >seq1544 Length=892 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| || || || || ||||||||||| || | ||| || | || |||| ||| Sbjct 177 TGAAGGGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAGCTGC 236 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| | ||| ||||| || ||||| || || ||||| || || || Sbjct 237 TTACCCGCAAAGATCAACCTCTGCTGATCCGGAGGAATACCCTCCTTATCCTGGATCTTA 296 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || || || || || | ||||| ||||| Sbjct 297 GCCTTAACGTTGTCAATGGTGTCTGAGCTCTCGACCTCGAGGGTAATAGTTTTACCGGTA 356 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || ||||| |||||||| Sbjct 357 AGAGTCTTCACAAAGATCTGCAT 379 >seq442 Length=625744 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || |||||||||||||| || || || |||||||| | | || | | | Sbjct 417713 ACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGACAAGGTGCGGCC 417772 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||||| || || || || | ||| || || ||||| || ||||| || || Sbjct 417773 ATCCTCAAGCTGCTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGGGGGATGCCCTCCTT 417832 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||| || || || || ||| | || | || || || | ||||| || || |||| Sbjct 417833 ATCCTGGATCTTAGACTTCACATTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGAT 417892 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || | || || || || ||||||||| Sbjct 417893 GGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 417929 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||||||||| || || || || ||||| |||| || || | | || || Sbjct 417435 ACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTACGACCGTCCTCG 417494 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || || | |||||| || ||||| |||||||| || ||||| || Sbjct 417495 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGG 417554 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTC---AGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || || | || | |||||| |||| ||||| || || |||| || Sbjct 417555 ATCTTGGACTTGACGTTGTCGATAGTGTCGCTAGAC---TCCACCTCGAGGGTGATGGTC 417611 Query 101438 TTGCCGGTTAAAGTTTTTACAA 101459 ||||| || | ||| || |||| Sbjct 417612 TTGCCAGTGAGAGTCTTGACAA 417633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396270846438348